Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30860 | 5' | -56.2 | NC_006552.1 | + | 62433 | 0.67 | 0.607488 |
Target: 5'- gUCCcCgaCGUGCccGCCGGCGuuccGGCGCc -3' miRNA: 3'- aAGGuGaaGCACGu-CGGCCGC----UUGCG- -5' |
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30860 | 5' | -56.2 | NC_006552.1 | + | 59391 | 0.68 | 0.542889 |
Target: 5'- aUCCAUggagggCGcgGCAGCgucaGGCGGugGCg -3' miRNA: 3'- aAGGUGaa----GCa-CGUCGg---CCGCUugCG- -5' |
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30860 | 5' | -56.2 | NC_006552.1 | + | 58445 | 0.67 | 0.618377 |
Target: 5'- -gCCGCUuggcaccgUCGUcGCAGgCGGCGugaagcACGCa -3' miRNA: 3'- aaGGUGA--------AGCA-CGUCgGCCGCu-----UGCG- -5' |
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30860 | 5' | -56.2 | NC_006552.1 | + | 58380 | 0.69 | 0.50108 |
Target: 5'- --aCACUg-GUGCAGaCCGGCuacgguGAGCGCg -3' miRNA: 3'- aagGUGAagCACGUC-GGCCG------CUUGCG- -5' |
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30860 | 5' | -56.2 | NC_006552.1 | + | 56846 | 0.73 | 0.289217 |
Target: 5'- cUUCCAgggaUUCG-GCAGCgccgcggcgagCGGCGAACGCa -3' miRNA: 3'- -AAGGUg---AAGCaCGUCG-----------GCCGCUUGCG- -5' |
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30860 | 5' | -56.2 | NC_006552.1 | + | 56809 | 0.66 | 0.661954 |
Target: 5'- aUCCGC-UCGaGCGcGcCCGGCGGAUGg -3' miRNA: 3'- aAGGUGaAGCaCGU-C-GGCCGCUUGCg -5' |
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30860 | 5' | -56.2 | NC_006552.1 | + | 50509 | 0.66 | 0.705091 |
Target: 5'- -gCCACggCGccgGCAGCCGucaaGCGAGCa- -3' miRNA: 3'- aaGGUGaaGCa--CGUCGGC----CGCUUGcg -5' |
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30860 | 5' | -56.2 | NC_006552.1 | + | 44886 | 0.69 | 0.50108 |
Target: 5'- -aCCAUgagUUGggcaGCGGCCGGCGGAguUGCu -3' miRNA: 3'- aaGGUGa--AGCa---CGUCGGCCGCUU--GCG- -5' |
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30860 | 5' | -56.2 | NC_006552.1 | + | 44497 | 0.69 | 0.511407 |
Target: 5'- gUUCCGCUUCcucgaucgcaGCAGCuCGGCGGccCGCa -3' miRNA: 3'- -AAGGUGAAGca--------CGUCG-GCCGCUu-GCG- -5' |
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30860 | 5' | -56.2 | NC_006552.1 | + | 44392 | 0.67 | 0.629277 |
Target: 5'- gUCCAg-UCa-GCAGcCCGGCGAuuGCGCu -3' miRNA: 3'- aAGGUgaAGcaCGUC-GGCCGCU--UGCG- -5' |
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30860 | 5' | -56.2 | NC_006552.1 | + | 44203 | 0.66 | 0.683619 |
Target: 5'- cUUCGCgcUCGUggcGCAGgUGGCGAucACGCa -3' miRNA: 3'- aAGGUGa-AGCA---CGUCgGCCGCU--UGCG- -5' |
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30860 | 5' | -56.2 | NC_006552.1 | + | 43048 | 0.71 | 0.402757 |
Target: 5'- cUUCACcUCGUGCAguuccaacucaccGCCGGUGAGCa- -3' miRNA: 3'- aAGGUGaAGCACGU-------------CGGCCGCUUGcg -5' |
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30860 | 5' | -56.2 | NC_006552.1 | + | 41030 | 0.66 | 0.694385 |
Target: 5'- aUCCGCgUUGgcUGCGGCCGuaGGgaaGCGCu -3' miRNA: 3'- aAGGUGaAGC--ACGUCGGCcgCU---UGCG- -5' |
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30860 | 5' | -56.2 | NC_006552.1 | + | 40765 | 0.69 | 0.511407 |
Target: 5'- gUCaGCUUCuUGCGGCUGGCGugauuCGCc -3' miRNA: 3'- aAGgUGAAGcACGUCGGCCGCuu---GCG- -5' |
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30860 | 5' | -56.2 | NC_006552.1 | + | 39623 | 0.67 | 0.644539 |
Target: 5'- cUUCCACUgCGgGCGggaugcccagugccuGCUGGCG-ACGCa -3' miRNA: 3'- -AAGGUGAaGCaCGU---------------CGGCCGCuUGCG- -5' |
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30860 | 5' | -56.2 | NC_006552.1 | + | 39135 | 0.8 | 0.101886 |
Target: 5'- gUUCCAUgcaUUGUGCAGuCCGGUGGACGUg -3' miRNA: 3'- -AAGGUGa--AGCACGUC-GGCCGCUUGCG- -5' |
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30860 | 5' | -56.2 | NC_006552.1 | + | 38935 | 0.68 | 0.585782 |
Target: 5'- -aCCuuCUUCGgagaaaUGCGGCCGGaCGccAGCGCg -3' miRNA: 3'- aaGGu-GAAGC------ACGUCGGCC-GC--UUGCG- -5' |
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30860 | 5' | -56.2 | NC_006552.1 | + | 37658 | 0.7 | 0.441237 |
Target: 5'- cUCCGCUUC-UGCuGCCGGCcccuguccuuGGAUGUa -3' miRNA: 3'- aAGGUGAAGcACGuCGGCCG----------CUUGCG- -5' |
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30860 | 5' | -56.2 | NC_006552.1 | + | 34808 | 0.67 | 0.59662 |
Target: 5'- -aCCACUUCGccuucgGaCGGCCgaGGCG-GCGCa -3' miRNA: 3'- aaGGUGAAGCa-----C-GUCGG--CCGCuUGCG- -5' |
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30860 | 5' | -56.2 | NC_006552.1 | + | 34566 | 0.69 | 0.521822 |
Target: 5'- aUCCACgUCcaGCAcGUCGGCGGugGUg -3' miRNA: 3'- aAGGUGaAGcaCGU-CGGCCGCUugCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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