miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30862 3' -58 NC_006552.1 + 62141 0.66 0.585782
Target:  5'- -cGCCAagGUgGCCGAccagauccUGCCGcagUACUGGCa -3'
miRNA:   3'- aaCGGU--CG-CGGCU--------ACGGUa--GUGACCG- -5'
30862 3' -58 NC_006552.1 + 52321 0.66 0.574982
Target:  5'- -aGCCAccucGCGCCG--GCCA-CGCcGGCa -3'
miRNA:   3'- aaCGGU----CGCGGCuaCGGUaGUGaCCG- -5'
30862 3' -58 NC_006552.1 + 45248 0.66 0.574982
Target:  5'- cUUGCCGGCaaCCGAUGCguUCcaaACcGGCc -3'
miRNA:   3'- -AACGGUCGc-GGCUACGguAG---UGaCCG- -5'
30862 3' -58 NC_006552.1 + 27625 0.66 0.574982
Target:  5'- gUGCUgaugcGCGCCGA-GCCGaaUCGCUcacccGGCg -3'
miRNA:   3'- aACGGu----CGCGGCUaCGGU--AGUGA-----CCG- -5'
30862 3' -58 NC_006552.1 + 5079 0.66 0.571751
Target:  5'- -aGCCAGCGCUaucgcaGCCAgaacggcgcccaacUCGCgGGCg -3'
miRNA:   3'- aaCGGUCGCGGcua---CGGU--------------AGUGaCCG- -5'
30862 3' -58 NC_006552.1 + 50508 0.66 0.564228
Target:  5'- -aGCCacGGCGCCGGcaGCCGUCAa--GCg -3'
miRNA:   3'- aaCGG--UCGCGGCUa-CGGUAGUgacCG- -5'
30862 3' -58 NC_006552.1 + 41123 0.66 0.564228
Target:  5'- -aGCCGcgucgcgguccuGCGCgaUGAUGCCGcagCGCUGGUc -3'
miRNA:   3'- aaCGGU------------CGCG--GCUACGGUa--GUGACCG- -5'
30862 3' -58 NC_006552.1 + 62972 0.66 0.553528
Target:  5'- -gGCCGGCGCCGuucuucUGCCggCGgacCUGcGCc -3'
miRNA:   3'- aaCGGUCGCGGCu-----ACGGuaGU---GAC-CG- -5'
30862 3' -58 NC_006552.1 + 12943 0.66 0.553528
Target:  5'- -gGCCAGCGCgcugGCCuuggC-CUGGCg -3'
miRNA:   3'- aaCGGUCGCGgcuaCGGua--GuGACCG- -5'
30862 3' -58 NC_006552.1 + 63283 0.66 0.542889
Target:  5'- -cGCCGGUcaccaccuCCGAUGCCAuUUACUgucGGCa -3'
miRNA:   3'- aaCGGUCGc-------GGCUACGGU-AGUGA---CCG- -5'
30862 3' -58 NC_006552.1 + 33747 0.66 0.542889
Target:  5'- -cGCCAGCGCgGcgGCggCAUUGCUGuugaGCa -3'
miRNA:   3'- aaCGGUCGCGgCuaCG--GUAGUGAC----CG- -5'
30862 3' -58 NC_006552.1 + 58610 0.66 0.532318
Target:  5'- -gGUgGGCGUCGGUGgCcgCGCcgGGCa -3'
miRNA:   3'- aaCGgUCGCGGCUACgGuaGUGa-CCG- -5'
30862 3' -58 NC_006552.1 + 30681 0.67 0.521822
Target:  5'- aUGUCGuCGagCGAUGCCG-CACUGGUg -3'
miRNA:   3'- aACGGUcGCg-GCUACGGUaGUGACCG- -5'
30862 3' -58 NC_006552.1 + 26710 0.67 0.521822
Target:  5'- -cGCCcagGGCGCCGAaGgCGUCGCcGuGCa -3'
miRNA:   3'- aaCGG---UCGCGGCUaCgGUAGUGaC-CG- -5'
30862 3' -58 NC_006552.1 + 20957 0.67 0.521822
Target:  5'- -cGuCCGGCaCCGGgaugGCCGUCAUgcucGGCg -3'
miRNA:   3'- aaC-GGUCGcGGCUa---CGGUAGUGa---CCG- -5'
30862 3' -58 NC_006552.1 + 48877 0.67 0.511407
Target:  5'- -gGCCA-CGCCGGUGCU---GCUGcGCa -3'
miRNA:   3'- aaCGGUcGCGGCUACGGuagUGAC-CG- -5'
30862 3' -58 NC_006552.1 + 17984 0.67 0.50108
Target:  5'- -aGCCAacGCGuCCGggGCCAUCGgcGGUa -3'
miRNA:   3'- aaCGGU--CGC-GGCuaCGGUAGUgaCCG- -5'
30862 3' -58 NC_006552.1 + 42531 0.67 0.470676
Target:  5'- -cGCCAGUuCCGcgGCCAguauCUGGUu -3'
miRNA:   3'- aaCGGUCGcGGCuaCGGUagu-GACCG- -5'
30862 3' -58 NC_006552.1 + 52941 0.67 0.470676
Target:  5'- -cGCCuGCGCCGgcGCCcgcCGCcGGUg -3'
miRNA:   3'- aaCGGuCGCGGCuaCGGua-GUGaCCG- -5'
30862 3' -58 NC_006552.1 + 59008 0.67 0.470676
Target:  5'- -cGCCGGCGCCGAg--CAUCACg--- -3'
miRNA:   3'- aaCGGUCGCGGCUacgGUAGUGaccg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.