Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30862 | 3' | -58 | NC_006552.1 | + | 27625 | 0.66 | 0.574982 |
Target: 5'- gUGCUgaugcGCGCCGA-GCCGaaUCGCUcacccGGCg -3' miRNA: 3'- aACGGu----CGCGGCUaCGGU--AGUGA-----CCG- -5' |
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30862 | 3' | -58 | NC_006552.1 | + | 62141 | 0.66 | 0.585782 |
Target: 5'- -cGCCAagGUgGCCGAccagauccUGCCGcagUACUGGCa -3' miRNA: 3'- aaCGGU--CG-CGGCU--------ACGGUa--GUGACCG- -5' |
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30862 | 3' | -58 | NC_006552.1 | + | 52321 | 0.66 | 0.574982 |
Target: 5'- -aGCCAccucGCGCCG--GCCA-CGCcGGCa -3' miRNA: 3'- aaCGGU----CGCGGCuaCGGUaGUGaCCG- -5' |
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30862 | 3' | -58 | NC_006552.1 | + | 45248 | 0.66 | 0.574982 |
Target: 5'- cUUGCCGGCaaCCGAUGCguUCcaaACcGGCc -3' miRNA: 3'- -AACGGUCGc-GGCUACGguAG---UGaCCG- -5' |
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30862 | 3' | -58 | NC_006552.1 | + | 41123 | 0.66 | 0.564228 |
Target: 5'- -aGCCGcgucgcgguccuGCGCgaUGAUGCCGcagCGCUGGUc -3' miRNA: 3'- aaCGGU------------CGCG--GCUACGGUa--GUGACCG- -5' |
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30862 | 3' | -58 | NC_006552.1 | + | 5079 | 0.66 | 0.571751 |
Target: 5'- -aGCCAGCGCUaucgcaGCCAgaacggcgcccaacUCGCgGGCg -3' miRNA: 3'- aaCGGUCGCGGcua---CGGU--------------AGUGaCCG- -5' |
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30862 | 3' | -58 | NC_006552.1 | + | 62972 | 0.66 | 0.553528 |
Target: 5'- -gGCCGGCGCCGuucuucUGCCggCGgacCUGcGCc -3' miRNA: 3'- aaCGGUCGCGGCu-----ACGGuaGU---GAC-CG- -5' |
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30862 | 3' | -58 | NC_006552.1 | + | 12943 | 0.66 | 0.553528 |
Target: 5'- -gGCCAGCGCgcugGCCuuggC-CUGGCg -3' miRNA: 3'- aaCGGUCGCGgcuaCGGua--GuGACCG- -5' |
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30862 | 3' | -58 | NC_006552.1 | + | 63283 | 0.66 | 0.542889 |
Target: 5'- -cGCCGGUcaccaccuCCGAUGCCAuUUACUgucGGCa -3' miRNA: 3'- aaCGGUCGc-------GGCUACGGU-AGUGA---CCG- -5' |
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30862 | 3' | -58 | NC_006552.1 | + | 33747 | 0.66 | 0.542889 |
Target: 5'- -cGCCAGCGCgGcgGCggCAUUGCUGuugaGCa -3' miRNA: 3'- aaCGGUCGCGgCuaCG--GUAGUGAC----CG- -5' |
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30862 | 3' | -58 | NC_006552.1 | + | 58610 | 0.66 | 0.532318 |
Target: 5'- -gGUgGGCGUCGGUGgCcgCGCcgGGCa -3' miRNA: 3'- aaCGgUCGCGGCUACgGuaGUGa-CCG- -5' |
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30862 | 3' | -58 | NC_006552.1 | + | 50508 | 0.66 | 0.564228 |
Target: 5'- -aGCCacGGCGCCGGcaGCCGUCAa--GCg -3' miRNA: 3'- aaCGG--UCGCGGCUa-CGGUAGUgacCG- -5' |
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30862 | 3' | -58 | NC_006552.1 | + | 42531 | 0.67 | 0.470676 |
Target: 5'- -cGCCAGUuCCGcgGCCAguauCUGGUu -3' miRNA: 3'- aaCGGUCGcGGCuaCGGUagu-GACCG- -5' |
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30862 | 3' | -58 | NC_006552.1 | + | 52941 | 0.67 | 0.470676 |
Target: 5'- -cGCCuGCGCCGgcGCCcgcCGCcGGUg -3' miRNA: 3'- aaCGGuCGCGGCuaCGGua-GUGaCCG- -5' |
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30862 | 3' | -58 | NC_006552.1 | + | 59008 | 0.67 | 0.470676 |
Target: 5'- -cGCCGGCGCCGAg--CAUCACg--- -3' miRNA: 3'- aaCGGUCGCGGCUacgGUAGUGaccg -5' |
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30862 | 3' | -58 | NC_006552.1 | + | 48877 | 0.67 | 0.511407 |
Target: 5'- -gGCCA-CGCCGGUGCU---GCUGcGCa -3' miRNA: 3'- aaCGGUcGCGGCUACGGuagUGAC-CG- -5' |
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30862 | 3' | -58 | NC_006552.1 | + | 30681 | 0.67 | 0.521822 |
Target: 5'- aUGUCGuCGagCGAUGCCG-CACUGGUg -3' miRNA: 3'- aACGGUcGCg-GCUACGGUaGUGACCG- -5' |
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30862 | 3' | -58 | NC_006552.1 | + | 26710 | 0.67 | 0.521822 |
Target: 5'- -cGCCcagGGCGCCGAaGgCGUCGCcGuGCa -3' miRNA: 3'- aaCGG---UCGCGGCUaCgGUAGUGaC-CG- -5' |
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30862 | 3' | -58 | NC_006552.1 | + | 20957 | 0.67 | 0.521822 |
Target: 5'- -cGuCCGGCaCCGGgaugGCCGUCAUgcucGGCg -3' miRNA: 3'- aaC-GGUCGcGGCUa---CGGUAGUGa---CCG- -5' |
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30862 | 3' | -58 | NC_006552.1 | + | 17984 | 0.67 | 0.50108 |
Target: 5'- -aGCCAacGCGuCCGggGCCAUCGgcGGUa -3' miRNA: 3'- aaCGGU--CGC-GGCuaCGGUAGUgaCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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