miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30865 5' -55.7 NC_006552.1 + 17481 0.66 0.715057
Target:  5'- -aGGuACCACGGUGA--AGCgauucGGAGCg -3'
miRNA:   3'- uaCC-UGGUGCCGCUguUCGa----CCUUGa -5'
30865 5' -55.7 NC_006552.1 + 16799 0.66 0.693519
Target:  5'- -cGGcuGCCACaGGUGcCAAcGCUGGAGCc -3'
miRNA:   3'- uaCC--UGGUG-CCGCuGUU-CGACCUUGa -5'
30865 5' -55.7 NC_006552.1 + 42959 0.66 0.693519
Target:  5'- uUGGGCUuCGGCGACAccGCgauaauacGGAGCg -3'
miRNA:   3'- uACCUGGuGCCGCUGUu-CGa-------CCUUGa -5'
30865 5' -55.7 NC_006552.1 + 34511 0.66 0.682657
Target:  5'- -cGGGCgGCGGCGGCA-GCUcGAuCUg -3'
miRNA:   3'- uaCCUGgUGCCGCUGUuCGAcCUuGA- -5'
30865 5' -55.7 NC_006552.1 + 1973 0.67 0.649822
Target:  5'- -cGGACCugcaccCGaGCGACAGcGCUGGGcuGCa -3'
miRNA:   3'- uaCCUGGu-----GC-CGCUGUU-CGACCU--UGa -5'
30865 5' -55.7 NC_006552.1 + 2987 0.67 0.615742
Target:  5'- aGUGGAUUAccCGGCGACAacaccggAGCgcgcGGAGCa -3'
miRNA:   3'- -UACCUGGU--GCCGCUGU-------UCGa---CCUUGa -5'
30865 5' -55.7 NC_006552.1 + 25292 0.7 0.452149
Target:  5'- gAUGGACCGgguagcggugucgguCGGCGucCAAGCUGGGc-- -3'
miRNA:   3'- -UACCUGGU---------------GCCGCu-GUUCGACCUuga -5'
30865 5' -55.7 NC_006552.1 + 59570 0.73 0.308262
Target:  5'- -cGGAgguugaugcCUACGGCGugGAGCUGGAcccgGCUc -3'
miRNA:   3'- uaCCU---------GGUGCCGCugUUCGACCU----UGA- -5'
30865 5' -55.7 NC_006552.1 + 52531 0.73 0.308262
Target:  5'- cUGGACCACgcauGGCGACu-GgUGGAACg -3'
miRNA:   3'- uACCUGGUG----CCGCUGuuCgACCUUGa -5'
30865 5' -55.7 NC_006552.1 + 27747 0.77 0.177135
Target:  5'- gAUGGugUGCGGCGugAgacgcggcuuggauGGCUGGAACa -3'
miRNA:   3'- -UACCugGUGCCGCugU--------------UCGACCUUGa -5'
30865 5' -55.7 NC_006552.1 + 13954 0.78 0.160163
Target:  5'- -cGGGCCACGuCGAUguAGGCUGGAACUc -3'
miRNA:   3'- uaCCUGGUGCcGCUG--UUCGACCUUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.