Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30870 | 3' | -60.1 | NC_006552.1 | + | 1170 | 0.67 | 0.449033 |
Target: 5'- gUCGgCGaggguguagucuuuaGCUUCugCuuuuGCCUGGCGGaCAg -3' miRNA: 3'- -AGCgGC---------------UGAAGugGu---CGGACCGCC-GU- -5' |
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30870 | 3' | -60.1 | NC_006552.1 | + | 2627 | 0.66 | 0.503686 |
Target: 5'- -aGCCGAUUcgAUgGGgCUGGCGGCc -3' miRNA: 3'- agCGGCUGAagUGgUCgGACCGCCGu -5' |
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30870 | 3' | -60.1 | NC_006552.1 | + | 4732 | 0.68 | 0.373652 |
Target: 5'- -gGCCGAggcggcgucucCUgCACCAGCUUcGGCGGUg -3' miRNA: 3'- agCGGCU-----------GAaGUGGUCGGA-CCGCCGu -5' |
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30870 | 3' | -60.1 | NC_006552.1 | + | 4843 | 0.66 | 0.513755 |
Target: 5'- gUCGCgCaGC-UCACCAGCaaGGCGaGCGa -3' miRNA: 3'- -AGCG-GcUGaAGUGGUCGgaCCGC-CGU- -5' |
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30870 | 3' | -60.1 | NC_006552.1 | + | 5421 | 0.67 | 0.445253 |
Target: 5'- uUCGCCaucaGGCUgcgCGCCAGUuguucgccgcgCUGGCGGg- -3' miRNA: 3'- -AGCGG----CUGAa--GUGGUCG-----------GACCGCCgu -5' |
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30870 | 3' | -60.1 | NC_006552.1 | + | 5592 | 0.66 | 0.482829 |
Target: 5'- gCGCCGAa---GCCGGCCaGGCugacggucagcgcGGCAa -3' miRNA: 3'- aGCGGCUgaagUGGUCGGaCCG-------------CCGU- -5' |
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30870 | 3' | -60.1 | NC_006552.1 | + | 11057 | 0.7 | 0.288713 |
Target: 5'- cCGCCgGGCUUCAgCAGgCUGuaGGCGu -3' miRNA: 3'- aGCGG-CUGAAGUgGUCgGACcgCCGU- -5' |
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30870 | 3' | -60.1 | NC_006552.1 | + | 12155 | 0.66 | 0.502684 |
Target: 5'- cCGCCcucGAUggCAUCGGCCagguuguucauggUGGCGGCc -3' miRNA: 3'- aGCGG---CUGaaGUGGUCGG-------------ACCGCCGu -5' |
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30870 | 3' | -60.1 | NC_006552.1 | + | 12619 | 0.66 | 0.483813 |
Target: 5'- gUCGCCGGCcguagUCugcCCGGCgCUGGCuacGCGg -3' miRNA: 3'- -AGCGGCUGa----AGu--GGUCG-GACCGc--CGU- -5' |
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30870 | 3' | -60.1 | NC_006552.1 | + | 12950 | 0.67 | 0.445253 |
Target: 5'- gCGCUGGCcUU---GGCCUGGCGGUg -3' miRNA: 3'- aGCGGCUGaAGuggUCGGACCGCCGu -5' |
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30870 | 3' | -60.1 | NC_006552.1 | + | 13170 | 0.68 | 0.399579 |
Target: 5'- gUCGCgGGCgUUCugCGuacgcucgaauGCCUGGCGGa- -3' miRNA: 3'- -AGCGgCUG-AAGugGU-----------CGGACCGCCgu -5' |
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30870 | 3' | -60.1 | NC_006552.1 | + | 15100 | 0.68 | 0.380454 |
Target: 5'- cCGCugCGGCUUCGCCAGguucgccucgaaCUGGCGcGCGu -3' miRNA: 3'- aGCG--GCUGAAGUGGUCg-----------GACCGC-CGU- -5' |
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30870 | 3' | -60.1 | NC_006552.1 | + | 16778 | 0.67 | 0.417491 |
Target: 5'- cCGCCc-CUUCGCCAGCCgcgcCGGCu -3' miRNA: 3'- aGCGGcuGAAGUGGUCGGacc-GCCGu -5' |
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30870 | 3' | -60.1 | NC_006552.1 | + | 19545 | 0.68 | 0.399579 |
Target: 5'- cCGCUGACagagCGCCGGCCgcuagcUGaGCGGUg -3' miRNA: 3'- aGCGGCUGaa--GUGGUCGG------AC-CGCCGu -5' |
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30870 | 3' | -60.1 | NC_006552.1 | + | 20534 | 0.69 | 0.34889 |
Target: 5'- -aGCCGGCcuugcucgcgCACCAcaucuaccuGCCUGGCGaGCAu -3' miRNA: 3'- agCGGCUGaa--------GUGGU---------CGGACCGC-CGU- -5' |
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30870 | 3' | -60.1 | NC_006552.1 | + | 21126 | 0.66 | 0.474019 |
Target: 5'- -gGUCGGCUgcUCGCCcaGGUUgacgGGCGGCGg -3' miRNA: 3'- agCGGCUGA--AGUGG--UCGGa---CCGCCGU- -5' |
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30870 | 3' | -60.1 | NC_006552.1 | + | 22012 | 0.67 | 0.41387 |
Target: 5'- aUCGCUGACgguggcggcguccUCgACCAGgacaCUGGCGGCc -3' miRNA: 3'- -AGCGGCUGa------------AG-UGGUCg---GACCGCCGu -5' |
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30870 | 3' | -60.1 | NC_006552.1 | + | 24267 | 0.72 | 0.214178 |
Target: 5'- gUCGCCGGCacUACCGGCa--GCGGCAu -3' miRNA: 3'- -AGCGGCUGaaGUGGUCGgacCGCCGU- -5' |
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30870 | 3' | -60.1 | NC_006552.1 | + | 24992 | 0.7 | 0.288713 |
Target: 5'- uUCGUCaGGCUccUgGCCAGCCgcucgacagcGGCGGCAu -3' miRNA: 3'- -AGCGG-CUGA--AgUGGUCGGa---------CCGCCGU- -5' |
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30870 | 3' | -60.1 | NC_006552.1 | + | 26514 | 0.68 | 0.399579 |
Target: 5'- gCGCCuGC--CACCAGCagcGGCGGCGc -3' miRNA: 3'- aGCGGcUGaaGUGGUCGga-CCGCCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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