Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30870 | 3' | -60.1 | NC_006552.1 | + | 35106 | 0.66 | 0.513755 |
Target: 5'- cCGCuCGGCaUCuuGCCGGUCaGGCGGUu -3' miRNA: 3'- aGCG-GCUGaAG--UGGUCGGaCCGCCGu -5' |
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30870 | 3' | -60.1 | NC_006552.1 | + | 33738 | 0.69 | 0.333043 |
Target: 5'- aUCGCCaAC--CGCCAGCgCggcGGCGGCAu -3' miRNA: 3'- -AGCGGcUGaaGUGGUCG-Ga--CCGCCGU- -5' |
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30870 | 3' | -60.1 | NC_006552.1 | + | 20534 | 0.69 | 0.34889 |
Target: 5'- -aGCCGGCcuugcucgcgCACCAcaucuaccuGCCUGGCGaGCAu -3' miRNA: 3'- agCGGCUGaa--------GUGGU---------CGGACCGC-CGU- -5' |
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30870 | 3' | -60.1 | NC_006552.1 | + | 55968 | 0.69 | 0.34889 |
Target: 5'- cCGCCG-CUUCACCGGCCgcgccgaaGGCc -3' miRNA: 3'- aGCGGCuGAAGUGGUCGGaccg----CCGu -5' |
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30870 | 3' | -60.1 | NC_006552.1 | + | 4732 | 0.68 | 0.373652 |
Target: 5'- -gGCCGAggcggcgucucCUgCACCAGCUUcGGCGGUg -3' miRNA: 3'- agCGGCU-----------GAaGUGGUCGGA-CCGCCGu -5' |
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30870 | 3' | -60.1 | NC_006552.1 | + | 15100 | 0.68 | 0.380454 |
Target: 5'- cCGCugCGGCUUCGCCAGguucgccucgaaCUGGCGcGCGu -3' miRNA: 3'- aGCG--GCUGAAGUGGUCg-----------GACCGC-CGU- -5' |
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30870 | 3' | -60.1 | NC_006552.1 | + | 36170 | 0.68 | 0.382167 |
Target: 5'- gCGCUGGCcUCGCCAGCaucGcCGGCAc -3' miRNA: 3'- aGCGGCUGaAGUGGUCGgacC-GCCGU- -5' |
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30870 | 3' | -60.1 | NC_006552.1 | + | 34145 | 0.68 | 0.382167 |
Target: 5'- cCGCCcaGGCUUgCGCCagAGCCUGGCcGCc -3' miRNA: 3'- aGCGG--CUGAA-GUGG--UCGGACCGcCGu -5' |
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30870 | 3' | -60.1 | NC_006552.1 | + | 26514 | 0.68 | 0.399579 |
Target: 5'- gCGCCuGC--CACCAGCagcGGCGGCGc -3' miRNA: 3'- aGCGGcUGaaGUGGUCGga-CCGCCGU- -5' |
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30870 | 3' | -60.1 | NC_006552.1 | + | 28724 | 0.69 | 0.333043 |
Target: 5'- gUUGUCGAuCUgcgggaaGCCGGCC-GGCGGCGa -3' miRNA: 3'- -AGCGGCU-GAag-----UGGUCGGaCCGCCGU- -5' |
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30870 | 3' | -60.1 | NC_006552.1 | + | 11057 | 0.7 | 0.288713 |
Target: 5'- cCGCCgGGCUUCAgCAGgCUGuaGGCGu -3' miRNA: 3'- aGCGG-CUGAAGUgGUCgGACcgCCGU- -5' |
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30870 | 3' | -60.1 | NC_006552.1 | + | 24992 | 0.7 | 0.288713 |
Target: 5'- uUCGUCaGGCUccUgGCCAGCCgcucgacagcGGCGGCAu -3' miRNA: 3'- -AGCGG-CUGA--AgUGGUCGGa---------CCGCCGU- -5' |
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30870 | 3' | -60.1 | NC_006552.1 | + | 59669 | 0.75 | 0.133617 |
Target: 5'- uUCGCCuGCcUCGCCGGCCaacGGCGGUg -3' miRNA: 3'- -AGCGGcUGaAGUGGUCGGa--CCGCCGu -5' |
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30870 | 3' | -60.1 | NC_006552.1 | + | 36402 | 0.73 | 0.18833 |
Target: 5'- cUCGCCGGCgcucggagaCGCCuuGGCUUgGGCGGCAg -3' miRNA: 3'- -AGCGGCUGaa-------GUGG--UCGGA-CCGCCGU- -5' |
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30870 | 3' | -60.1 | NC_006552.1 | + | 24267 | 0.72 | 0.214178 |
Target: 5'- gUCGCCGGCacUACCGGCa--GCGGCAu -3' miRNA: 3'- -AGCGGCUGaaGUGGUCGgacCGCCGU- -5' |
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30870 | 3' | -60.1 | NC_006552.1 | + | 52946 | 0.71 | 0.236997 |
Target: 5'- gCGCCGGCgccCGCC-GCCgGuGCGGCAu -3' miRNA: 3'- aGCGGCUGaa-GUGGuCGGaC-CGCCGU- -5' |
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30870 | 3' | -60.1 | NC_006552.1 | + | 34494 | 0.71 | 0.25542 |
Target: 5'- gUCGCCcucgaACUUCACgGGCggcGGCGGCAg -3' miRNA: 3'- -AGCGGc----UGAAGUGgUCGga-CCGCCGU- -5' |
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30870 | 3' | -60.1 | NC_006552.1 | + | 61024 | 0.71 | 0.25542 |
Target: 5'- aCGCCGaACUUgAUCAggcGCgCUGGCGGCc -3' miRNA: 3'- aGCGGC-UGAAgUGGU---CG-GACCGCCGu -5' |
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30870 | 3' | -60.1 | NC_006552.1 | + | 32188 | 0.7 | 0.268344 |
Target: 5'- -gGCCGACUUCagcACCGGCaUGGUcgGGCGc -3' miRNA: 3'- agCGGCUGAAG---UGGUCGgACCG--CCGU- -5' |
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30870 | 3' | -60.1 | NC_006552.1 | + | 47995 | 0.7 | 0.281791 |
Target: 5'- uUCGCCGggGCUUUACC-GCaCUGGagGGCAa -3' miRNA: 3'- -AGCGGC--UGAAGUGGuCG-GACCg-CCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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