miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30870 5' -54 NC_006552.1 + 55916 0.66 0.825377
Target:  5'- aCUACGGCCUGucGCC-GGagAucccGGCGGa -3'
miRNA:   3'- cGAUGCCGGACu-UGGaCCagU----UCGUC- -5'
30870 5' -54 NC_006552.1 + 12646 0.66 0.825377
Target:  5'- gGCUACgcgggucuuGGCCUGugccuuGGCCUGcUCAcGCAGg -3'
miRNA:   3'- -CGAUG---------CCGGAC------UUGGACcAGUuCGUC- -5'
30870 5' -54 NC_006552.1 + 57414 0.66 0.825377
Target:  5'- -gUACGGCCUGGcCCUGGaCGA-CAc -3'
miRNA:   3'- cgAUGCCGGACUuGGACCaGUUcGUc -5'
30870 5' -54 NC_006552.1 + 6342 0.66 0.816127
Target:  5'- --aGCGGCCUcGAGCaCguugGuGUCGAGCAc -3'
miRNA:   3'- cgaUGCCGGA-CUUG-Ga---C-CAGUUCGUc -5'
30870 5' -54 NC_006552.1 + 53968 0.66 0.816127
Target:  5'- uGCUcgGCGGCa--AGCCUGaG-CAGGCAGg -3'
miRNA:   3'- -CGA--UGCCGgacUUGGAC-CaGUUCGUC- -5'
30870 5' -54 NC_006552.1 + 59461 0.66 0.806682
Target:  5'- aCUugGGCggCUGAGCugCUGGUgAGGCGc -3'
miRNA:   3'- cGAugCCG--GACUUG--GACCAgUUCGUc -5'
30870 5' -54 NC_006552.1 + 64493 0.66 0.797052
Target:  5'- cGCUgGCGGCCUGGcaggcgggguGCUUcGGaUgAAGCAGa -3'
miRNA:   3'- -CGA-UGCCGGACU----------UGGA-CC-AgUUCGUC- -5'
30870 5' -54 NC_006552.1 + 47901 0.66 0.797052
Target:  5'- cGCgugGCGGUgaGuACCUGGUCGucgaagugaacGGCAa -3'
miRNA:   3'- -CGa--UGCCGgaCuUGGACCAGU-----------UCGUc -5'
30870 5' -54 NC_006552.1 + 35925 0.66 0.79608
Target:  5'- aGCUugccugcGCGGCCUGGGCUUGGgccuUCcAGUg- -3'
miRNA:   3'- -CGA-------UGCCGGACUUGGACC----AGuUCGuc -5'
30870 5' -54 NC_006552.1 + 59080 0.66 0.794129
Target:  5'- cGCUGCGuuCCUGAugcgcuaucacagcACCggcGGUCAaugGGCAGa -3'
miRNA:   3'- -CGAUGCc-GGACU--------------UGGa--CCAGU---UCGUC- -5'
30870 5' -54 NC_006552.1 + 10416 0.66 0.78725
Target:  5'- cGCggcauguUGGCCUGAACCucaacuUGGUUAccAGUAGc -3'
miRNA:   3'- -CGau-----GCCGGACUUGG------ACCAGU--UCGUC- -5'
30870 5' -54 NC_006552.1 + 34758 0.67 0.777284
Target:  5'- gGCgcCGGCCaggUGAACCagcauggacUGGUcCAGGUAGg -3'
miRNA:   3'- -CGauGCCGG---ACUUGG---------ACCA-GUUCGUC- -5'
30870 5' -54 NC_006552.1 + 64440 0.67 0.767168
Target:  5'- cGCccuCGGCCUG-GCCgUGGUgGGGCuGg -3'
miRNA:   3'- -CGau-GCCGGACuUGG-ACCAgUUCGuC- -5'
30870 5' -54 NC_006552.1 + 45057 0.67 0.767168
Target:  5'- uGCUgGCGuGCCUGcguuCCggUGGUCGGGCGa -3'
miRNA:   3'- -CGA-UGC-CGGACuu--GG--ACCAGUUCGUc -5'
30870 5' -54 NC_006552.1 + 64302 0.67 0.767168
Target:  5'- aCUGCGGCg-GAcGCCUGGUCcucaucaaGAGCGa -3'
miRNA:   3'- cGAUGCCGgaCU-UGGACCAG--------UUCGUc -5'
30870 5' -54 NC_006552.1 + 41039 0.67 0.767168
Target:  5'- gGCUGCGGCCguaggGAAgCgcucgcGGauuuccUCGGGCAGg -3'
miRNA:   3'- -CGAUGCCGGa----CUUgGa-----CC------AGUUCGUC- -5'
30870 5' -54 NC_006552.1 + 12296 0.67 0.767168
Target:  5'- cGCUcguugAgGGCCUGAGCCaUGGUgCGuagucgcucGGCGGc -3'
miRNA:   3'- -CGA-----UgCCGGACUUGG-ACCA-GU---------UCGUC- -5'
30870 5' -54 NC_006552.1 + 35107 0.67 0.746526
Target:  5'- cGCU-CGGCaucuuGCC-GGUCAGGCGGu -3'
miRNA:   3'- -CGAuGCCGgacu-UGGaCCAGUUCGUC- -5'
30870 5' -54 NC_006552.1 + 64235 0.68 0.713642
Target:  5'- gGUUGCGGCCa-GACCUGGagcuUCAuugaggacggaccAGCAGa -3'
miRNA:   3'- -CGAUGCCGGacUUGGACC----AGU-------------UCGUC- -5'
30870 5' -54 NC_006552.1 + 8174 0.68 0.693082
Target:  5'- uGCgcauCGGCCgcguccaucACCUGGUCGcGCAGu -3'
miRNA:   3'- -CGau--GCCGGacu------UGGACCAGUuCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.