Results 41 - 47 of 47 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 30876 | 3' | -57.1 | NC_006552.1 | + | 8116 | 0.74 | 0.225997 |
|
Target: 5'- uUCCgGCCauGCAUCAGCCAUcuGCGCCAg -3' miRNA: 3'- cAGG-UGG--CGUAGUCGGUGcuUGCGGU- -5' |
|||||||
| 30876 | 3' | -57.1 | NC_006552.1 | + | 7207 | 0.67 | 0.593145 |
|
Target: 5'- cGUCCccggcgcgcagcgaGCCGCu---GCCGCGGgccuGCGCCAu -3' miRNA: 3'- -CAGG--------------UGGCGuaguCGGUGCU----UGCGGU- -5' |
|||||||
| 30876 | 3' | -57.1 | NC_006552.1 | + | 5293 | 0.67 | 0.564235 |
|
Target: 5'- aGUCgCGgCGCAUCgAGCUACc-GCGCCAg -3' miRNA: 3'- -CAG-GUgGCGUAG-UCGGUGcuUGCGGU- -5' |
|||||||
| 30876 | 3' | -57.1 | NC_006552.1 | + | 3970 | 0.67 | 0.574905 |
|
Target: 5'- --gUACCaGCAUCAGCCAUGcAGCGUg- -3' miRNA: 3'- cagGUGG-CGUAGUCGGUGC-UUGCGgu -5' |
|||||||
| 30876 | 3' | -57.1 | NC_006552.1 | + | 3655 | 0.66 | 0.650405 |
|
Target: 5'- -aCCGCCGaCGaCGGUgAccCGAACGCCAg -3' miRNA: 3'- caGGUGGC-GUaGUCGgU--GCUUGCGGU- -5' |
|||||||
| 30876 | 3' | -57.1 | NC_006552.1 | + | 2000 | 0.7 | 0.386911 |
|
Target: 5'- ---gGCUGCAUCAGCCugGAucCGCUg -3' miRNA: 3'- caggUGGCGUAGUCGGugCUu-GCGGu -5' |
|||||||
| 30876 | 3' | -57.1 | NC_006552.1 | + | 921 | 0.66 | 0.639593 |
|
Target: 5'- -gCCACUGU-UCAGCCACGugucgaAACGUCu -3' miRNA: 3'- caGGUGGCGuAGUCGGUGC------UUGCGGu -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home