miRNA display CGI

Results 41 - 47 of 47 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
30876	3'	-57.1	NC_006552.1	+	56863	0.66	0.650405
	Target:  5'- --gCGCCGCGgcgAGCgGCGAACGCa- -3' miRNA:   3'- cagGUGGCGUag-UCGgUGCUUGCGgu -5'
30876	3'	-57.1	NC_006552.1	+	62232	0.68	0.532571
	Target:  5'- -aUCACCGaGUcCAGCCACGGaaucgcGCGCCu -3' miRNA:   3'- caGGUGGCgUA-GUCGGUGCU------UGCGGu -5'
30876	3'	-57.1	NC_006552.1	+	63206	0.66	0.639593
	Target:  5'- uGUCCugGCCGCAaCGGUgaacccucgcggCACGuGCGCCGg -3' miRNA:   3'- -CAGG--UGGCGUaGUCG------------GUGCuUGCGGU- -5'
30876	3'	-57.1	NC_006552.1	+	63371	0.75	0.193249
	Target:  5'- gGUCCGCaccuGCGUCGGCCACGccaaaGCCAu -3' miRNA:   3'- -CAGGUGg---CGUAGUCGGUGCuug--CGGU- -5'
30876	3'	-57.1	NC_006552.1	+	63479	0.73	0.290906
	Target:  5'- uUCCGCUGC--CGGCCGCcGGCGCCGg -3' miRNA:   3'- cAGGUGGCGuaGUCGGUGcUUGCGGU- -5'
30876	3'	-57.1	NC_006552.1	+	63598	0.66	0.639593
	Target:  5'- aUCCACCaCAcCAGCC-CGcAGCGCUg -3' miRNA:   3'- cAGGUGGcGUaGUCGGuGC-UUGCGGu -5'
30876	3'	-57.1	NC_006552.1	+	63763	0.78	0.125189
	Target:  5'- -aCCGCCGCcaauaugcgccagGUC-GCCGCGGACGCCAu -3' miRNA:   3'- caGGUGGCG-------------UAGuCGGUGCUUGCGGU- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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