Results 21 - 40 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30876 | 3' | -57.1 | NC_006552.1 | + | 22143 | 0.73 | 0.270019 |
Target: 5'- cGUCCACCGUca-GGCCGCGcACGCg- -3' miRNA: 3'- -CAGGUGGCGuagUCGGUGCuUGCGgu -5' |
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30876 | 3' | -57.1 | NC_006552.1 | + | 24549 | 0.66 | 0.628775 |
Target: 5'- -aCCACCuGCAugacuUCAGCCAUGGcacCGCUg -3' miRNA: 3'- caGGUGG-CGU-----AGUCGGUGCUu--GCGGu -5' |
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30876 | 3' | -57.1 | NC_006552.1 | + | 26453 | 0.7 | 0.432629 |
Target: 5'- cUCCuggggGCCGCG-CAGCCACGccacagccGCGCCGu -3' miRNA: 3'- cAGG-----UGGCGUaGUCGGUGCu-------UGCGGU- -5' |
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30876 | 3' | -57.1 | NC_006552.1 | + | 26830 | 0.69 | 0.491408 |
Target: 5'- uGUUCACCGCAUCacgcacauagAGCCuCGGGCucucGCCGc -3' miRNA: 3'- -CAGGUGGCGUAG----------UCGGuGCUUG----CGGU- -5' |
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30876 | 3' | -57.1 | NC_006552.1 | + | 28475 | 0.66 | 0.627693 |
Target: 5'- aUCCACCGaGUCgaAGCCGcCGAugcggucgaaguaACGCCGc -3' miRNA: 3'- cAGGUGGCgUAG--UCGGU-GCU-------------UGCGGU- -5' |
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30876 | 3' | -57.1 | NC_006552.1 | + | 30322 | 0.67 | 0.564235 |
Target: 5'- uUUCACUGgAUCGguuaugcguGCCGCGAaauaGCGCCAg -3' miRNA: 3'- cAGGUGGCgUAGU---------CGGUGCU----UGCGGU- -5' |
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30876 | 3' | -57.1 | NC_006552.1 | + | 31388 | 0.66 | 0.650405 |
Target: 5'- cGUCaCAuCCGCAccgUCGGCgGCGc-CGCCAg -3' miRNA: 3'- -CAG-GU-GGCGU---AGUCGgUGCuuGCGGU- -5' |
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30876 | 3' | -57.1 | NC_006552.1 | + | 32027 | 0.67 | 0.574905 |
Target: 5'- -gCCAgCGCcauGUCAGCCAgGGGCGUg- -3' miRNA: 3'- caGGUgGCG---UAGUCGGUgCUUGCGgu -5' |
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30876 | 3' | -57.1 | NC_006552.1 | + | 33784 | 0.66 | 0.670894 |
Target: 5'- -cCgGCCGCGUUGGUCGCGAgcugauaACGCa- -3' miRNA: 3'- caGgUGGCGUAGUCGGUGCU-------UGCGgu -5' |
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30876 | 3' | -57.1 | NC_006552.1 | + | 36157 | 0.67 | 0.553618 |
Target: 5'- aUCgGCgGCAUCGGCgCugGccuCGCCAg -3' miRNA: 3'- cAGgUGgCGUAGUCG-GugCuu-GCGGU- -5' |
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30876 | 3' | -57.1 | NC_006552.1 | + | 38766 | 0.69 | 0.485358 |
Target: 5'- uGUCCugCGCGuacuUCAuGCCGCgcacguagccguaugGAAUGCCAg -3' miRNA: 3'- -CAGGugGCGU----AGU-CGGUG---------------CUUGCGGU- -5' |
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30876 | 3' | -57.1 | NC_006552.1 | + | 40565 | 0.66 | 0.639593 |
Target: 5'- aGUCCGCgCGCuuggUGGCCACGuaccACGCa- -3' miRNA: 3'- -CAGGUG-GCGua--GUCGGUGCu---UGCGgu -5' |
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30876 | 3' | -57.1 | NC_006552.1 | + | 41025 | 0.66 | 0.628775 |
Target: 5'- aGUUCAuCCGCGUUGGCUGCGGccguagggaaGCGCUc -3' miRNA: 3'- -CAGGU-GGCGUAGUCGGUGCU----------UGCGGu -5' |
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30876 | 3' | -57.1 | NC_006552.1 | + | 41395 | 0.66 | 0.628775 |
Target: 5'- -gCCACUcaGgGUCAGCCAgGcagcGCGCCAg -3' miRNA: 3'- caGGUGG--CgUAGUCGGUgCu---UGCGGU- -5' |
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30876 | 3' | -57.1 | NC_006552.1 | + | 49108 | 0.72 | 0.298143 |
Target: 5'- -aCCGCUGCcccacGUCAGCCGCGGcGCGCuCAa -3' miRNA: 3'- caGGUGGCG-----UAGUCGGUGCU-UGCG-GU- -5' |
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30876 | 3' | -57.1 | NC_006552.1 | + | 50491 | 0.71 | 0.369536 |
Target: 5'- -aUUACCGCGgaacaacCAGCCACG-GCGCCGg -3' miRNA: 3'- caGGUGGCGUa------GUCGGUGCuUGCGGU- -5' |
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30876 | 3' | -57.1 | NC_006552.1 | + | 51473 | 0.67 | 0.607156 |
Target: 5'- --aCugCGCAcCAGCCugGAA-GCCGc -3' miRNA: 3'- cagGugGCGUaGUCGGugCUUgCGGU- -5' |
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30876 | 3' | -57.1 | NC_006552.1 | + | 51619 | 0.71 | 0.344492 |
Target: 5'- -aCgAUCGCGUCGaaCGCGAGCGCCAg -3' miRNA: 3'- caGgUGGCGUAGUcgGUGCUUGCGGU- -5' |
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30876 | 3' | -57.1 | NC_006552.1 | + | 53218 | 0.82 | 0.06783 |
Target: 5'- aUCCACgGCAUCAGCCACGAACaGgCGa -3' miRNA: 3'- cAGGUGgCGUAGUCGGUGCUUG-CgGU- -5' |
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30876 | 3' | -57.1 | NC_006552.1 | + | 55966 | 0.7 | 0.423233 |
Target: 5'- uUCCGCCGCuucacCGGCCGCgccGAAgGCCu -3' miRNA: 3'- cAGGUGGCGua---GUCGGUG---CUUgCGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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