Results 1 - 20 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30876 | 3' | -57.1 | NC_006552.1 | + | 921 | 0.66 | 0.639593 |
Target: 5'- -gCCACUGU-UCAGCCACGugucgaAACGUCu -3' miRNA: 3'- caGGUGGCGuAGUCGGUGC------UUGCGGu -5' |
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30876 | 3' | -57.1 | NC_006552.1 | + | 2000 | 0.7 | 0.386911 |
Target: 5'- ---gGCUGCAUCAGCCugGAucCGCUg -3' miRNA: 3'- caggUGGCGUAGUCGGugCUu-GCGGu -5' |
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30876 | 3' | -57.1 | NC_006552.1 | + | 3655 | 0.66 | 0.650405 |
Target: 5'- -aCCGCCGaCGaCGGUgAccCGAACGCCAg -3' miRNA: 3'- caGGUGGC-GUaGUCGgU--GCUUGCGGU- -5' |
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30876 | 3' | -57.1 | NC_006552.1 | + | 3970 | 0.67 | 0.574905 |
Target: 5'- --gUACCaGCAUCAGCCAUGcAGCGUg- -3' miRNA: 3'- cagGUGG-CGUAGUCGGUGC-UUGCGgu -5' |
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30876 | 3' | -57.1 | NC_006552.1 | + | 5293 | 0.67 | 0.564235 |
Target: 5'- aGUCgCGgCGCAUCgAGCUACc-GCGCCAg -3' miRNA: 3'- -CAG-GUgGCGUAG-UCGGUGcuUGCGGU- -5' |
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30876 | 3' | -57.1 | NC_006552.1 | + | 7207 | 0.67 | 0.593145 |
Target: 5'- cGUCCccggcgcgcagcgaGCCGCu---GCCGCGGgccuGCGCCAu -3' miRNA: 3'- -CAGG--------------UGGCGuaguCGGUGCU----UGCGGU- -5' |
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30876 | 3' | -57.1 | NC_006552.1 | + | 8116 | 0.74 | 0.225997 |
Target: 5'- uUCCgGCCauGCAUCAGCCAUcuGCGCCAg -3' miRNA: 3'- cAGG-UGG--CGUAGUCGGUGcuUGCGGU- -5' |
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30876 | 3' | -57.1 | NC_006552.1 | + | 8170 | 0.74 | 0.240363 |
Target: 5'- cUCCugCGCAUCGGCCGCGuccaucaccuggucGCGCa- -3' miRNA: 3'- cAGGugGCGUAGUCGGUGCu-------------UGCGgu -5' |
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30876 | 3' | -57.1 | NC_006552.1 | + | 8481 | 0.66 | 0.6612 |
Target: 5'- uGUCCGCCuucuCGUCGGCCGuCaGACGCa- -3' miRNA: 3'- -CAGGUGGc---GUAGUCGGU-GcUUGCGgu -5' |
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30876 | 3' | -57.1 | NC_006552.1 | + | 10138 | 0.68 | 0.511818 |
Target: 5'- cGUCCACCaaGUcgCGGCCguuGAACGUCAc -3' miRNA: 3'- -CAGGUGG--CGuaGUCGGug-CUUGCGGU- -5' |
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30876 | 3' | -57.1 | NC_006552.1 | + | 11254 | 0.66 | 0.639593 |
Target: 5'- gGUCUgcucgcggAUCGCGUCGGCCAauAugGCCc -3' miRNA: 3'- -CAGG--------UGGCGUAGUCGGUgcUugCGGu -5' |
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30876 | 3' | -57.1 | NC_006552.1 | + | 11994 | 0.66 | 0.628775 |
Target: 5'- aGUCCACCGUcUCGGCgucCACcggcuCGCCGc -3' miRNA: 3'- -CAGGUGGCGuAGUCG---GUGcuu--GCGGU- -5' |
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30876 | 3' | -57.1 | NC_006552.1 | + | 12731 | 0.67 | 0.553618 |
Target: 5'- uGUUC-CgGCGUCAgGCgCAUGAACGCCu -3' miRNA: 3'- -CAGGuGgCGUAGU-CG-GUGCUUGCGGu -5' |
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30876 | 3' | -57.1 | NC_006552.1 | + | 13582 | 0.7 | 0.420438 |
Target: 5'- aUCCugCGCAUCAgGCUGCGGuccccgucuuccuuGCGCUg -3' miRNA: 3'- cAGGugGCGUAGU-CGGUGCU--------------UGCGGu -5' |
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30876 | 3' | -57.1 | NC_006552.1 | + | 13778 | 0.68 | 0.532571 |
Target: 5'- uGUCCGCCuGCuugcuguUCAGuCCA-GAACGCCc -3' miRNA: 3'- -CAGGUGG-CGu------AGUC-GGUgCUUGCGGu -5' |
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30876 | 3' | -57.1 | NC_006552.1 | + | 13909 | 0.67 | 0.553618 |
Target: 5'- -gCCGCCugcugaGCAUCGgugcguGCCACGAcaGCGCCc -3' miRNA: 3'- caGGUGG------CGUAGU------CGGUGCU--UGCGGu -5' |
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30876 | 3' | -57.1 | NC_006552.1 | + | 14693 | 0.67 | 0.596374 |
Target: 5'- uUCCugauGCUGCAc--GCCACGAGCGCuCAg -3' miRNA: 3'- cAGG----UGGCGUaguCGGUGCUUGCG-GU- -5' |
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30876 | 3' | -57.1 | NC_006552.1 | + | 16319 | 0.67 | 0.579186 |
Target: 5'- cGUCCGCaucCGUCaAGCCACGGGaugcggccggcugacCGCCAu -3' miRNA: 3'- -CAGGUGgc-GUAG-UCGGUGCUU---------------GCGGU- -5' |
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30876 | 3' | -57.1 | NC_006552.1 | + | 18474 | 0.67 | 0.564235 |
Target: 5'- -aCCGCCGCAagCGccCCACGcACGCCGg -3' miRNA: 3'- caGGUGGCGUa-GUc-GGUGCuUGCGGU- -5' |
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30876 | 3' | -57.1 | NC_006552.1 | + | 20229 | 0.67 | 0.563171 |
Target: 5'- cUCCACgGCggucuuguaggcaGUCAGCUugGAGauaGCCGc -3' miRNA: 3'- cAGGUGgCG-------------UAGUCGGugCUUg--CGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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