miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30877 3' -59.7 NC_006552.1 + 14418 0.67 0.475918
Target:  5'- aCCGU-GGCGcccUGCC--CGCUGCUGGCa -3'
miRNA:   3'- -GGUAgCCGU---ACGGaaGCGGCGGCCGg -5'
30877 3' -59.7 NC_006552.1 + 15342 0.66 0.55584
Target:  5'- gCA-CGGCcUGCag-CGCCGCaGGCUg -3'
miRNA:   3'- gGUaGCCGuACGgaaGCGGCGgCCGG- -5'
30877 3' -59.7 NC_006552.1 + 15558 0.7 0.336023
Target:  5'- gCGUCGGgGcuUGCUgcugCGCCGCCuGGUCc -3'
miRNA:   3'- gGUAGCCgU--ACGGaa--GCGGCGG-CCGG- -5'
30877 3' -59.7 NC_006552.1 + 15973 0.67 0.495408
Target:  5'- uCC-UCGGCA-GCCUgcuggagCGCgGCCuGCUg -3'
miRNA:   3'- -GGuAGCCGUaCGGAa------GCGgCGGcCGG- -5'
30877 3' -59.7 NC_006552.1 + 16335 0.7 0.328339
Target:  5'- gCCAcgggaugCGGCcggcugaccgccAUGCagaacCGCCGCCGGCCc -3'
miRNA:   3'- -GGUa------GCCG------------UACGgaa--GCGGCGGCCGG- -5'
30877 3' -59.7 NC_006552.1 + 16771 0.69 0.393425
Target:  5'- gCCAUCaccGCc--CCUUCGCCaGCCGcGCCg -3'
miRNA:   3'- -GGUAGc--CGuacGGAAGCGG-CGGC-CGG- -5'
30877 3' -59.7 NC_006552.1 + 18738 0.67 0.494425
Target:  5'- aUAUCgGGCAgugguccgGCCUgugcaauggccugUUGCUGCCGuGCCg -3'
miRNA:   3'- gGUAG-CCGUa-------CGGA-------------AGCGGCGGC-CGG- -5'
30877 3' -59.7 NC_006552.1 + 19701 0.72 0.240256
Target:  5'- -uGUCGGCAaagcgagauUGCaUUUCGgCGUCGGCCa -3'
miRNA:   3'- ggUAGCCGU---------ACG-GAAGCgGCGGCCGG- -5'
30877 3' -59.7 NC_006552.1 + 19736 0.67 0.505289
Target:  5'- aCGUUGGCGcugGCCgcUGCgCGCCaGGCUu -3'
miRNA:   3'- gGUAGCCGUa--CGGaaGCG-GCGG-CCGG- -5'
30877 3' -59.7 NC_006552.1 + 20521 0.68 0.419898
Target:  5'- --uUCGGCc-GCCUUCa--GCCGGCCu -3'
miRNA:   3'- gguAGCCGuaCGGAAGcggCGGCCGG- -5'
30877 3' -59.7 NC_006552.1 + 20694 0.66 0.535411
Target:  5'- gCGcCGGCAguCCUgUGCCGCCcGCCa -3'
miRNA:   3'- gGUaGCCGUacGGAaGCGGCGGcCGG- -5'
30877 3' -59.7 NC_006552.1 + 21885 0.67 0.476884
Target:  5'- aCCAgcgCGGCAauggaUGCCccguccaccagcagCGCCuGCaCGGCCu -3'
miRNA:   3'- -GGUa--GCCGU-----ACGGaa------------GCGG-CG-GCCGG- -5'
30877 3' -59.7 NC_006552.1 + 22680 0.69 0.389977
Target:  5'- aCCAcgagugCGGCAUGuCCUUauugaccugaacaG-CGCCGGCCa -3'
miRNA:   3'- -GGUa-----GCCGUAC-GGAAg------------CgGCGGCCGG- -5'
30877 3' -59.7 NC_006552.1 + 24279 0.7 0.336023
Target:  5'- aCCGgcagCGGCAUaGCgUagaCGCC-CCGGCCa -3'
miRNA:   3'- -GGUa---GCCGUA-CGgAa--GCGGcGGCCGG- -5'
30877 3' -59.7 NC_006552.1 + 26269 0.73 0.221284
Target:  5'- gCGUCGGCAggaugaccgugGCCgcgcccagcggguaGUCGCCGGCCa -3'
miRNA:   3'- gGUAGCCGUa----------CGGaag-----------CGGCGGCCGG- -5'
30877 3' -59.7 NC_006552.1 + 28610 0.66 0.56614
Target:  5'- -gAUCGGCGgcgguucgaUGCCUUCcaGCgGCagguaacggCGGCCg -3'
miRNA:   3'- ggUAGCCGU---------ACGGAAG--CGgCG---------GCCGG- -5'
30877 3' -59.7 NC_006552.1 + 29304 0.69 0.384844
Target:  5'- cCCA-CGGCGgcgGCgCaaUGuuGCCGGCCg -3'
miRNA:   3'- -GGUaGCCGUa--CG-GaaGCggCGGCCGG- -5'
30877 3' -59.7 NC_006552.1 + 31400 0.68 0.448356
Target:  5'- aCCGUCGGCGgcgccgccaguggugGUCUUCGCgGugagagugaCCgGGCCa -3'
miRNA:   3'- -GGUAGCCGUa--------------CGGAAGCGgC---------GG-CCGG- -5'
30877 3' -59.7 NC_006552.1 + 32826 0.7 0.351782
Target:  5'- gCgGUCGGUgaaGCUUUC-CCGCgGGCCg -3'
miRNA:   3'- -GgUAGCCGua-CGGAAGcGGCGgCCGG- -5'
30877 3' -59.7 NC_006552.1 + 32882 0.7 0.318545
Target:  5'- gCAUgGGCAcGCCgUCGCuCGCCaucugcgccaccagGGCCg -3'
miRNA:   3'- gGUAgCCGUaCGGaAGCG-GCGG--------------CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.