miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30877 3' -59.7 NC_006552.1 + 2070 0.68 0.456817
Target:  5'- gCGUCGuGCGcgGCCUgcugaucgaacUCGaCGCCGGCg -3'
miRNA:   3'- gGUAGC-CGUa-CGGA-----------AGCgGCGGCCGg -5'
30877 3' -59.7 NC_006552.1 + 3432 0.67 0.464409
Target:  5'- uUCAggGGCAcaccauguucccGCCUacgaacUCGCaCGCCGGCCc -3'
miRNA:   3'- -GGUagCCGUa-----------CGGA------AGCG-GCGGCCGG- -5'
30877 3' -59.7 NC_006552.1 + 3571 0.66 0.535411
Target:  5'- gCCA--GGUgcugGCCga-GCCGCCGGCg -3'
miRNA:   3'- -GGUagCCGua--CGGaagCGGCGGCCGg -5'
30877 3' -59.7 NC_006552.1 + 3832 0.67 0.466317
Target:  5'- gCAUCGGUAUaCCUgaGCUGCCgaGGCUg -3'
miRNA:   3'- gGUAGCCGUAcGGAagCGGCGG--CCGG- -5'
30877 3' -59.7 NC_006552.1 + 4434 0.68 0.438135
Target:  5'- aCCAUcCGGCGUGCCcUUGaCCaaaGCCugguagacGGCCu -3'
miRNA:   3'- -GGUA-GCCGUACGGaAGC-GG---CGG--------CCGG- -5'
30877 3' -59.7 NC_006552.1 + 4905 0.66 0.545595
Target:  5'- -gGUCGGCAgcgGCCUUauugagCGCUGCCuGUUu -3'
miRNA:   3'- ggUAGCCGUa--CGGAA------GCGGCGGcCGG- -5'
30877 3' -59.7 NC_006552.1 + 5424 0.66 0.525296
Target:  5'- gCCAUCaGGCugcgcGCCaguugUUCGCCGCgcUGGCg -3'
miRNA:   3'- -GGUAG-CCGua---CGG-----AAGCGGCG--GCCGg -5'
30877 3' -59.7 NC_006552.1 + 7211 0.7 0.351782
Target:  5'- cCCggCGcGCAgcgaGCCgcUGCCGCgGGCCu -3'
miRNA:   3'- -GGuaGC-CGUa---CGGaaGCGGCGgCCGG- -5'
30877 3' -59.7 NC_006552.1 + 9713 0.68 0.413625
Target:  5'- -uGUCGGCAUccuugacGCUggCGCgauucaucagcauggCGCCGGCCu -3'
miRNA:   3'- ggUAGCCGUA-------CGGaaGCG---------------GCGGCCGG- -5'
30877 3' -59.7 NC_006552.1 + 10841 0.71 0.271565
Target:  5'- gCCGggcugCGGCGcUGCCgacucUUCgGCUGCCGGCUu -3'
miRNA:   3'- -GGUa----GCCGU-ACGG-----AAG-CGGCGGCCGG- -5'
30877 3' -59.7 NC_006552.1 + 11592 0.68 0.447422
Target:  5'- cCCAg-GGCcUGCaccagUUCGCCGCCGaacucGCCa -3'
miRNA:   3'- -GGUagCCGuACGg----AAGCGGCGGC-----CGG- -5'
30877 3' -59.7 NC_006552.1 + 11876 0.68 0.447422
Target:  5'- aUCGUCGGCGa-CCUUCuccaGgCGCgCGGCCa -3'
miRNA:   3'- -GGUAGCCGUacGGAAG----CgGCG-GCCGG- -5'
30877 3' -59.7 NC_006552.1 + 12589 0.7 0.351782
Target:  5'- cCCGUgcuUGGUGUGCUUcgUCucgaugauGUCGCCGGCCg -3'
miRNA:   3'- -GGUA---GCCGUACGGA--AG--------CGGCGGCCGG- -5'
30877 3' -59.7 NC_006552.1 + 12916 0.7 0.351782
Target:  5'- gUCGUCGGUG-GUgUUCGCCacaaGCuCGGCCa -3'
miRNA:   3'- -GGUAGCCGUaCGgAAGCGG----CG-GCCGG- -5'
30877 3' -59.7 NC_006552.1 + 13628 0.68 0.456817
Target:  5'- -uGUCGGCAcggGCCU--GCuCGgCGGCCu -3'
miRNA:   3'- ggUAGCCGUa--CGGAagCG-GCgGCCGG- -5'
30877 3' -59.7 NC_006552.1 + 13674 0.66 0.545595
Target:  5'- cUCGUCGGUAcggGCgUccagUGCCGCCuGGCg -3'
miRNA:   3'- -GGUAGCCGUa--CGgAa---GCGGCGG-CCGg -5'
30877 3' -59.7 NC_006552.1 + 13921 0.72 0.236708
Target:  5'- gCAUCGGUgcGUGCCacgacagcgcccgCGUCGCgGGCCa -3'
miRNA:   3'- gGUAGCCG--UACGGaa-----------GCGGCGgCCGG- -5'
30877 3' -59.7 NC_006552.1 + 13986 0.69 0.393425
Target:  5'- gCAUCGGa----CUUCGCuCGCUGGCUg -3'
miRNA:   3'- gGUAGCCguacgGAAGCG-GCGGCCGG- -5'
30877 3' -59.7 NC_006552.1 + 14060 0.68 0.456817
Target:  5'- cUCAUCGGCGguuggcGCCcccugugUUGCgauacgGCCGGCCg -3'
miRNA:   3'- -GGUAGCCGUa-----CGGa------AGCGg-----CGGCCGG- -5'
30877 3' -59.7 NC_006552.1 + 14303 0.68 0.456817
Target:  5'- --uUCGGCGcggGCCUggGCC-UCGGCCu -3'
miRNA:   3'- gguAGCCGUa--CGGAagCGGcGGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.