miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30877 3' -59.7 NC_006552.1 + 61623 0.75 0.147756
Target:  5'- ---aCGGCAacUGCCUgaUCuggaugcccgagGCCGCCGGCCg -3'
miRNA:   3'- gguaGCCGU--ACGGA--AG------------CGGCGGCCGG- -5'
30877 3' -59.7 NC_006552.1 + 36164 0.75 0.147756
Target:  5'- gCAUCGGCGcugGCC-UCGCCagcaucGCCGGCa -3'
miRNA:   3'- gGUAGCCGUa--CGGaAGCGG------CGGCCGg -5'
30877 3' -59.7 NC_006552.1 + 61180 0.74 0.172792
Target:  5'- aCCAcgcUCGGCAaGCCUgCGCCGauauCGGCUg -3'
miRNA:   3'- -GGU---AGCCGUaCGGAaGCGGCg---GCCGG- -5'
30877 3' -59.7 NC_006552.1 + 64630 0.74 0.177775
Target:  5'- aCCA-CGGUAcgGCCgacgcuguucgccgCGCCGCCGGUCa -3'
miRNA:   3'- -GGUaGCCGUa-CGGaa------------GCGGCGGCCGG- -5'
30877 3' -59.7 NC_006552.1 + 62445 0.74 0.181946
Target:  5'- cCCGcCGGCGUuCCggCGCCGCUGcGCCu -3'
miRNA:   3'- -GGUaGCCGUAcGGaaGCGGCGGC-CGG- -5'
30877 3' -59.7 NC_006552.1 + 63453 0.73 0.203604
Target:  5'- gCCAaCGGauaggccugugcaaAUGCUUcCGCUGCCGGCCg -3'
miRNA:   3'- -GGUaGCCg-------------UACGGAaGCGGCGGCCGG- -5'
30877 3' -59.7 NC_006552.1 + 26269 0.73 0.221284
Target:  5'- gCGUCGGCAggaugaccgugGCCgcgcccagcggguaGUCGCCGGCCa -3'
miRNA:   3'- gGUAGCCGUa----------CGGaag-----------CGGCGGCCGG- -5'
30877 3' -59.7 NC_006552.1 + 13921 0.72 0.236708
Target:  5'- gCAUCGGUgcGUGCCacgacagcgcccgCGUCGCgGGCCa -3'
miRNA:   3'- gGUAGCCG--UACGGaa-----------GCGGCGgCCGG- -5'
30877 3' -59.7 NC_006552.1 + 19701 0.72 0.240256
Target:  5'- -uGUCGGCAaagcgagauUGCaUUUCGgCGUCGGCCa -3'
miRNA:   3'- ggUAGCCGU---------ACG-GAAGCgGCGGCCGG- -5'
30877 3' -59.7 NC_006552.1 + 10841 0.71 0.271565
Target:  5'- gCCGggcugCGGCGcUGCCgacucUUCgGCUGCCGGCUu -3'
miRNA:   3'- -GGUa----GCCGU-ACGG-----AAG-CGGCGGCCGG- -5'
30877 3' -59.7 NC_006552.1 + 39514 0.71 0.278208
Target:  5'- gCGUCGGCAacuuccugGCCgcccacgUCGCCGuUCGGCg -3'
miRNA:   3'- gGUAGCCGUa-------CGGa------AGCGGC-GGCCGg -5'
30877 3' -59.7 NC_006552.1 + 44393 0.71 0.29188
Target:  5'- uCCAgUCaGCA-GCCcggcgauugCGCUGCCGGCCg -3'
miRNA:   3'- -GGU-AGcCGUaCGGaa-------GCGGCGGCCGG- -5'
30877 3' -59.7 NC_006552.1 + 64423 0.71 0.29891
Target:  5'- gCCcUCGGCAU-Ca-UCGCCGCCcucGGCCu -3'
miRNA:   3'- -GGuAGCCGUAcGgaAGCGGCGG---CCGG- -5'
30877 3' -59.7 NC_006552.1 + 63816 0.71 0.306071
Target:  5'- --uUCGGCGcccagGCCagccaGCCGCCGGCg -3'
miRNA:   3'- gguAGCCGUa----CGGaag--CGGCGGCCGg -5'
30877 3' -59.7 NC_006552.1 + 35090 0.7 0.313363
Target:  5'- --cUCGGCGUcGCUggUGCCGCuCGGCa -3'
miRNA:   3'- gguAGCCGUA-CGGaaGCGGCG-GCCGg -5'
30877 3' -59.7 NC_006552.1 + 44067 0.7 0.313363
Target:  5'- gCCGccCGGCGcGCuuccuCUUCGCCGCCGcGCUc -3'
miRNA:   3'- -GGUa-GCCGUaCG-----GAAGCGGCGGC-CGG- -5'
30877 3' -59.7 NC_006552.1 + 32882 0.7 0.318545
Target:  5'- gCAUgGGCAcGCCgUCGCuCGCCaucugcgccaccagGGCCg -3'
miRNA:   3'- gGUAgCCGUaCGGaAGCG-GCGG--------------CCGG- -5'
30877 3' -59.7 NC_006552.1 + 55676 0.7 0.320786
Target:  5'- uUCAUCGGC-UGCCaggaaggggUCGaUCGCCGGgCg -3'
miRNA:   3'- -GGUAGCCGuACGGa--------AGC-GGCGGCCgG- -5'
30877 3' -59.7 NC_006552.1 + 35829 0.7 0.328339
Target:  5'- uCCAU-GGCA-GCCUgaGCCGCC-GCCa -3'
miRNA:   3'- -GGUAgCCGUaCGGAagCGGCGGcCGG- -5'
30877 3' -59.7 NC_006552.1 + 16335 0.7 0.328339
Target:  5'- gCCAcgggaugCGGCcggcugaccgccAUGCagaacCGCCGCCGGCCc -3'
miRNA:   3'- -GGUa------GCCG------------UACGgaa--GCGGCGGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.