Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30878 | 3' | -59.2 | NC_006552.1 | + | 37776 | 0.66 | 0.591664 |
Target: 5'- cCCGCGCUcugcaucACAGCGUCGGcGaUCGgCGcGAu -3' miRNA: 3'- -GGCGCGA-------UGUCGUAGCU-C-GGCgGC-CU- -5' |
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30878 | 3' | -59.2 | NC_006552.1 | + | 3575 | 0.67 | 0.510419 |
Target: 5'- -gGUGCU--GGC--CGAGCCGCCGGc -3' miRNA: 3'- ggCGCGAugUCGuaGCUCGGCGGCCu -5' |
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30878 | 3' | -59.2 | NC_006552.1 | + | 62759 | 0.67 | 0.510419 |
Target: 5'- -gGCGCUGCcGCGccugCGAGCgaCGCCuGGAc -3' miRNA: 3'- ggCGCGAUGuCGUa---GCUCG--GCGG-CCU- -5' |
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30878 | 3' | -59.2 | NC_006552.1 | + | 47952 | 0.67 | 0.510419 |
Target: 5'- cCCGCGcCUGCAaggugaaagccGCAUaaaGAGCaugccccgguuCGCCGGGg -3' miRNA: 3'- -GGCGC-GAUGU-----------CGUAg--CUCG-----------GCGGCCU- -5' |
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30878 | 3' | -59.2 | NC_006552.1 | + | 54000 | 0.67 | 0.510419 |
Target: 5'- gCGCGUgGCccuggcccuGGCcgCGAGCCGCCa-- -3' miRNA: 3'- gGCGCGaUG---------UCGuaGCUCGGCGGccu -5' |
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30878 | 3' | -59.2 | NC_006552.1 | + | 52442 | 0.66 | 0.540825 |
Target: 5'- aCUGgGUUGaGGgAUgGGGCUGCCGGAu -3' miRNA: 3'- -GGCgCGAUgUCgUAgCUCGGCGGCCU- -5' |
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30878 | 3' | -59.2 | NC_006552.1 | + | 26870 | 0.66 | 0.540825 |
Target: 5'- gCCGCGUUGCAGCGcggcaucuUCG-GCgacguuguugaUGCCGGc -3' miRNA: 3'- -GGCGCGAUGUCGU--------AGCuCG-----------GCGGCCu -5' |
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30878 | 3' | -59.2 | NC_006552.1 | + | 54115 | 0.66 | 0.540825 |
Target: 5'- aCCGCagGCUcugGC-GCAUCGucugagcgccgGGCCGcCCGGAg -3' miRNA: 3'- -GGCG--CGA---UGuCGUAGC-----------UCGGC-GGCCU- -5' |
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30878 | 3' | -59.2 | NC_006552.1 | + | 33748 | 0.66 | 0.551099 |
Target: 5'- gCCaGCGCggcgGCGGCAuugcugUUGAGCagaaCGCCGGc -3' miRNA: 3'- -GG-CGCGa---UGUCGU------AGCUCG----GCGGCCu -5' |
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30878 | 3' | -59.2 | NC_006552.1 | + | 2038 | 0.68 | 0.461443 |
Target: 5'- uCUGCGCcugggACAgGCGcUUGAGCgCGCCGGc -3' miRNA: 3'- -GGCGCGa----UGU-CGU-AGCUCG-GCGGCCu -5' |
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30878 | 3' | -59.2 | NC_006552.1 | + | 38263 | 0.68 | 0.460488 |
Target: 5'- aUCGCGCUGCGGCucGUUGAGCaccacgacacgauCGgCGGu -3' miRNA: 3'- -GGCGCGAUGUCG--UAGCUCG-------------GCgGCCu -5' |
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30878 | 3' | -59.2 | NC_006552.1 | + | 13237 | 0.68 | 0.433274 |
Target: 5'- gCGCGCUGCAugagggcuacauGCucAUCGAGC-GUCGGGg -3' miRNA: 3'- gGCGCGAUGU------------CG--UAGCUCGgCGGCCU- -5' |
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30878 | 3' | -59.2 | NC_006552.1 | + | 37033 | 0.71 | 0.279999 |
Target: 5'- aCGCGCUGCcaccgcuAGCGUCcuGAGagGCCGGAa -3' miRNA: 3'- gGCGCGAUG-------UCGUAG--CUCggCGGCCU- -5' |
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30878 | 3' | -59.2 | NC_006552.1 | + | 43960 | 0.7 | 0.323792 |
Target: 5'- cCCGCGCUccuuCAGCAggaacuugUCGAuGCCGCUGu- -3' miRNA: 3'- -GGCGCGAu---GUCGU--------AGCU-CGGCGGCcu -5' |
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30878 | 3' | -59.2 | NC_006552.1 | + | 61440 | 0.7 | 0.347131 |
Target: 5'- cCCGCGCccgggccgUACGGCAauaCGAG-UGCCGGGa -3' miRNA: 3'- -GGCGCG--------AUGUCGUa--GCUCgGCGGCCU- -5' |
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30878 | 3' | -59.2 | NC_006552.1 | + | 32499 | 0.7 | 0.363348 |
Target: 5'- gCGCGCguggACGGCAUCacggGAGCgCGCCa-- -3' miRNA: 3'- gGCGCGa---UGUCGUAG----CUCG-GCGGccu -5' |
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30878 | 3' | -59.2 | NC_006552.1 | + | 32347 | 0.69 | 0.375008 |
Target: 5'- gCCGCGCacgGCGGCuucgcgcacugcgucGUUGAGCCaGUCGGc -3' miRNA: 3'- -GGCGCGa--UGUCG---------------UAGCUCGG-CGGCCu -5' |
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30878 | 3' | -59.2 | NC_006552.1 | + | 29171 | 0.69 | 0.38864 |
Target: 5'- -gGCGCUGgaacacCAGCAUUGAGCUGCaCGa- -3' miRNA: 3'- ggCGCGAU------GUCGUAGCUCGGCG-GCcu -5' |
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30878 | 3' | -59.2 | NC_006552.1 | + | 26289 | 0.69 | 0.406131 |
Target: 5'- gCCGCGCc-CAGCGgguAGUCGCCGGc -3' miRNA: 3'- -GGCGCGauGUCGUagcUCGGCGGCCu -5' |
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30878 | 3' | -59.2 | NC_006552.1 | + | 54283 | 0.69 | 0.41506 |
Target: 5'- aCCaC-CUACGGCuUCGcGCCGCCGGu -3' miRNA: 3'- -GGcGcGAUGUCGuAGCuCGGCGGCCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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