Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30882 | 3' | -62 | NC_006552.1 | + | 65072 | 0.78 | 0.07681 |
Target: 5'- aCUGcaACGgaacCUGGACGCCgCCGGCGCCGg -3' miRNA: 3'- gGAC--UGC----GACCUGUGG-GGCCGCGGCg -5' |
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30882 | 3' | -62 | NC_006552.1 | + | 62435 | 0.72 | 0.196439 |
Target: 5'- cCCcGACGUgcccgccGGCGuuCCGGCGCCGCu -3' miRNA: 3'- -GGaCUGCGac-----CUGUggGGCCGCGGCG- -5' |
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30882 | 3' | -62 | NC_006552.1 | + | 14770 | 0.71 | 0.206485 |
Target: 5'- --cGGCGCgagGGAUGCCCaCGGUGCC-Cg -3' miRNA: 3'- ggaCUGCGa--CCUGUGGG-GCCGCGGcG- -5' |
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30882 | 3' | -62 | NC_006552.1 | + | 29215 | 0.71 | 0.206485 |
Target: 5'- gCUGAUGCggUGGACAUCCUGGaucgcgGUCGCc -3' miRNA: 3'- gGACUGCG--ACCUGUGGGGCCg-----CGGCG- -5' |
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30882 | 3' | -62 | NC_006552.1 | + | 9722 | 0.71 | 0.211672 |
Target: 5'- cCUUGACGCUGGcgcgauuCAUCagcaUGGCGCCGg -3' miRNA: 3'- -GGACUGCGACCu------GUGGg---GCCGCGGCg -5' |
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30882 | 3' | -62 | NC_006552.1 | + | 55922 | 0.71 | 0.216971 |
Target: 5'- gCCUGuCGCcGGAgAUCCCGGCGgacaagCGCa -3' miRNA: 3'- -GGACuGCGaCCUgUGGGGCCGCg-----GCG- -5' |
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30882 | 3' | -62 | NC_006552.1 | + | 61632 | 0.71 | 0.216971 |
Target: 5'- gCCUGAU-CUGGAUGCCCgaGGCcGCCGg -3' miRNA: 3'- -GGACUGcGACCUGUGGGg-CCG-CGGCg -5' |
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30882 | 3' | -62 | NC_006552.1 | + | 3571 | 0.71 | 0.233553 |
Target: 5'- gCCaGGUGCUGGccgaGCCgCCGGCGCCGg -3' miRNA: 3'- -GGaCUGCGACCug--UGG-GGCCGCGGCg -5' |
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30882 | 3' | -62 | NC_006552.1 | + | 44464 | 0.71 | 0.233553 |
Target: 5'- aCUG-CGCUGccggcgccggcaGACGCCCCaGGCGuuCCGCu -3' miRNA: 3'- gGACuGCGAC------------CUGUGGGG-CCGC--GGCG- -5' |
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30882 | 3' | -62 | NC_006552.1 | + | 12341 | 0.7 | 0.239312 |
Target: 5'- cCCUGACuGC-GGuCAUCCUcgaaGGCGUCGCg -3' miRNA: 3'- -GGACUG-CGaCCuGUGGGG----CCGCGGCG- -5' |
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30882 | 3' | -62 | NC_006552.1 | + | 29167 | 0.7 | 0.244005 |
Target: 5'- gCCUGGCGCUGGaACACCagcauugaGCUGCa -3' miRNA: 3'- -GGACUGCGACC-UGUGGggccg---CGGCG- -5' |
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30882 | 3' | -62 | NC_006552.1 | + | 18300 | 0.7 | 0.257305 |
Target: 5'- aCCUGGCcucGCccGGGCGCagcacuggaaCuuGGCGCCGCu -3' miRNA: 3'- -GGACUG---CGa-CCUGUG----------GggCCGCGGCG- -5' |
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30882 | 3' | -62 | NC_006552.1 | + | 2149 | 0.7 | 0.261659 |
Target: 5'- gCCgUGGCGCUGGcCACcauaaccccucuCCCGcgauagcccauaccGCGCCGCu -3' miRNA: 3'- -GG-ACUGCGACCuGUG------------GGGC--------------CGCGGCG- -5' |
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30882 | 3' | -62 | NC_006552.1 | + | 53995 | 0.7 | 0.269904 |
Target: 5'- gCCaGGCGC--GugGCCCUGGCccugGCCGCg -3' miRNA: 3'- -GGaCUGCGacCugUGGGGCCG----CGGCG- -5' |
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30882 | 3' | -62 | NC_006552.1 | + | 14837 | 0.7 | 0.275734 |
Target: 5'- gCCUucGAUGCUGGGCGCCuuGGgcuuguucaggcuCGCCa- -3' miRNA: 3'- -GGA--CUGCGACCUGUGGggCC-------------GCGGcg -5' |
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30882 | 3' | -62 | NC_006552.1 | + | 64134 | 0.7 | 0.276388 |
Target: 5'- gCCUGAUucgcaacgcaGCUcGcGcCGCCCUGGCGCaCGCg -3' miRNA: 3'- -GGACUG----------CGA-C-CuGUGGGGCCGCG-GCG- -5' |
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30882 | 3' | -62 | NC_006552.1 | + | 48992 | 0.7 | 0.276388 |
Target: 5'- gCCUcccCGCcGGGCAagCCCGGCGgCGCg -3' miRNA: 3'- -GGAcu-GCGaCCUGUg-GGGCCGCgGCG- -5' |
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30882 | 3' | -62 | NC_006552.1 | + | 53590 | 0.69 | 0.282996 |
Target: 5'- -gUGGCGCcGGcCAgUUCGGUGCCGCc -3' miRNA: 3'- ggACUGCGaCCuGUgGGGCCGCGGCG- -5' |
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30882 | 3' | -62 | NC_006552.1 | + | 52942 | 0.69 | 0.289729 |
Target: 5'- gCCUG-CGCcGGcgccCGCCgCCGGUGCgGCa -3' miRNA: 3'- -GGACuGCGaCCu---GUGG-GGCCGCGgCG- -5' |
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30882 | 3' | -62 | NC_006552.1 | + | 59059 | 0.69 | 0.289729 |
Target: 5'- --cGAgGCUGG-CGCUCUGcGCGUCGCu -3' miRNA: 3'- ggaCUgCGACCuGUGGGGC-CGCGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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