miRNA display CGI


Results 1 - 20 of 43 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30882 3' -62 NC_006552.1 + 2052 0.69 0.289729
Target:  5'- --aGGCGCuUGaGCGCgCCGGCGUCGUg -3'
miRNA:   3'- ggaCUGCG-ACcUGUGgGGCCGCGGCG- -5'
30882 3' -62 NC_006552.1 + 2149 0.7 0.261659
Target:  5'- gCCgUGGCGCUGGcCACcauaaccccucuCCCGcgauagcccauaccGCGCCGCu -3'
miRNA:   3'- -GG-ACUGCGACCuGUG------------GGGC--------------CGCGGCG- -5'
30882 3' -62 NC_006552.1 + 2642 0.67 0.414418
Target:  5'- gCUGGCGgcccuuCUGGGCuagggACCgCgCGGCGCCGa -3'
miRNA:   3'- gGACUGC------GACCUG-----UGG-G-GCCGCGGCg -5'
30882 3' -62 NC_006552.1 + 2701 0.67 0.39627
Target:  5'- -gUGGCGCaUGGACGCUUCuucagcgcagcuuGGCGCCa- -3'
miRNA:   3'- ggACUGCG-ACCUGUGGGG-------------CCGCGGcg -5'
30882 3' -62 NC_006552.1 + 3571 0.71 0.233553
Target:  5'- gCCaGGUGCUGGccgaGCCgCCGGCGCCGg -3'
miRNA:   3'- -GGaCUGCGACCug--UGG-GGCCGCGGCg -5'
30882 3' -62 NC_006552.1 + 9387 0.66 0.432168
Target:  5'- aCUGccGCGCacGuCGCCCCGuGCGgCGCg -3'
miRNA:   3'- gGAC--UGCGacCuGUGGGGC-CGCgGCG- -5'
30882 3' -62 NC_006552.1 + 9722 0.71 0.211672
Target:  5'- cCUUGACGCUGGcgcgauuCAUCagcaUGGCGCCGg -3'
miRNA:   3'- -GGACUGCGACCu------GUGGg---GCCGCGGCg -5'
30882 3' -62 NC_006552.1 + 12341 0.7 0.239312
Target:  5'- cCCUGACuGC-GGuCAUCCUcgaaGGCGUCGCg -3'
miRNA:   3'- -GGACUG-CGaCCuGUGGGG----CCGCGGCG- -5'
30882 3' -62 NC_006552.1 + 12872 0.66 0.450355
Target:  5'- uCCUGcuGCGCcucGGCgACCUCGGCGgCGUg -3'
miRNA:   3'- -GGAC--UGCGac-CUG-UGGGGCCGCgGCG- -5'
30882 3' -62 NC_006552.1 + 14694 0.67 0.38865
Target:  5'- uCCUGAUGCUGcACGCCaCGaGCGCUc- -3'
miRNA:   3'- -GGACUGCGACcUGUGGgGC-CGCGGcg -5'
30882 3' -62 NC_006552.1 + 14770 0.71 0.206485
Target:  5'- --cGGCGCgagGGAUGCCCaCGGUGCC-Cg -3'
miRNA:   3'- ggaCUGCGa--CCUGUGGG-GCCGCGGcG- -5'
30882 3' -62 NC_006552.1 + 14837 0.7 0.275734
Target:  5'- gCCUucGAUGCUGGGCGCCuuGGgcuuguucaggcuCGCCa- -3'
miRNA:   3'- -GGA--CUGCGACCUGUGGggCC-------------GCGGcg -5'
30882 3' -62 NC_006552.1 + 15443 0.68 0.35597
Target:  5'- gCUGACGgUacGGAuucCGCUgCCGGCGCCaGCg -3'
miRNA:   3'- gGACUGCgA--CCU---GUGG-GGCCGCGG-CG- -5'
30882 3' -62 NC_006552.1 + 18300 0.7 0.257305
Target:  5'- aCCUGGCcucGCccGGGCGCagcacuggaaCuuGGCGCCGCu -3'
miRNA:   3'- -GGACUG---CGa-CCUGUG----------GggCCGCGGCG- -5'
30882 3' -62 NC_006552.1 + 19738 0.66 0.459605
Target:  5'- gUUGGCGCUGGcCGCUgCG-CGCCa- -3'
miRNA:   3'- gGACUGCGACCuGUGGgGCcGCGGcg -5'
30882 3' -62 NC_006552.1 + 20793 0.66 0.423237
Target:  5'- --aGACGUUGGGCACCgUGauccCGCuCGCg -3'
miRNA:   3'- ggaCUGCGACCUGUGGgGCc---GCG-GCG- -5'
30882 3' -62 NC_006552.1 + 22593 0.66 0.423237
Target:  5'- --aGAUGCUGGcguaCCgGGCGUCGCc -3'
miRNA:   3'- ggaCUGCGACCugugGGgCCGCGGCG- -5'
30882 3' -62 NC_006552.1 + 24522 0.66 0.441209
Target:  5'- uCCaGGCGCU-GACGCCCaua-GCCGCc -3'
miRNA:   3'- -GGaCUGCGAcCUGUGGGgccgCGGCG- -5'
30882 3' -62 NC_006552.1 + 26704 0.69 0.310678
Target:  5'- aCUGGuCGCccaGGGCGCCgaaGGCGUCGCc -3'
miRNA:   3'- gGACU-GCGa--CCUGUGGgg-CCGCGGCG- -5'
30882 3' -62 NC_006552.1 + 29167 0.7 0.244005
Target:  5'- gCCUGGCGCUGGaACACCagcauugaGCUGCa -3'
miRNA:   3'- -GGACUGCGACC-UGUGGggccg---CGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.