miRNA display CGI


Results 21 - 40 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30882 3' -62 NC_006552.1 + 29215 0.71 0.206485
Target:  5'- gCUGAUGCggUGGACAUCCUGGaucgcgGUCGCc -3'
miRNA:   3'- gGACUGCG--ACCUGUGGGGCCg-----CGGCG- -5'
30882 3' -62 NC_006552.1 + 36168 0.68 0.332759
Target:  5'- --cGGCGCUGGccucgccaGCAUCgCCGGCacCCGCg -3'
miRNA:   3'- ggaCUGCGACC--------UGUGG-GGCCGc-GGCG- -5'
30882 3' -62 NC_006552.1 + 37761 0.67 0.397122
Target:  5'- uUCgGGCGCUGG-UAUCCCGcGCuCUGCa -3'
miRNA:   3'- -GGaCUGCGACCuGUGGGGC-CGcGGCG- -5'
30882 3' -62 NC_006552.1 + 37997 0.69 0.296586
Target:  5'- aUCUGcUGCUGGAUcuGCUCCGGgGuCUGCu -3'
miRNA:   3'- -GGACuGCGACCUG--UGGGGCCgC-GGCG- -5'
30882 3' -62 NC_006552.1 + 38459 0.66 0.42235
Target:  5'- uCCUGGaugcCGCUGGuggccgugccuuuGCGCCCCuGGaaaccgGCCGUg -3'
miRNA:   3'- -GGACU----GCGACC-------------UGUGGGG-CCg-----CGGCG- -5'
30882 3' -62 NC_006552.1 + 40779 0.66 0.423237
Target:  5'- gCUGGCGUgauuCGCCUCGGCGauCUGCa -3'
miRNA:   3'- gGACUGCGaccuGUGGGGCCGC--GGCG- -5'
30882 3' -62 NC_006552.1 + 44464 0.71 0.233553
Target:  5'- aCUG-CGCUGccggcgccggcaGACGCCCCaGGCGuuCCGCu -3'
miRNA:   3'- gGACuGCGAC------------CUGUGGGG-CCGC--GGCG- -5'
30882 3' -62 NC_006552.1 + 48992 0.7 0.276388
Target:  5'- gCCUcccCGCcGGGCAagCCCGGCGgCGCg -3'
miRNA:   3'- -GGAcu-GCGaCCUGUg-GGGCCGCgGCG- -5'
30882 3' -62 NC_006552.1 + 52942 0.69 0.289729
Target:  5'- gCCUG-CGCcGGcgccCGCCgCCGGUGCgGCa -3'
miRNA:   3'- -GGACuGCGaCCu---GUGG-GGCCGCGgCG- -5'
30882 3' -62 NC_006552.1 + 53528 0.68 0.325273
Target:  5'- aCCgcgcGAUGCcGGACGCCCaagccuGCGcCCGCa -3'
miRNA:   3'- -GGa---CUGCGaCCUGUGGGgc----CGC-GGCG- -5'
30882 3' -62 NC_006552.1 + 53590 0.69 0.282996
Target:  5'- -gUGGCGCcGGcCAgUUCGGUGCCGCc -3'
miRNA:   3'- ggACUGCGaCCuGUgGGGCCGCGGCG- -5'
30882 3' -62 NC_006552.1 + 53995 0.7 0.269904
Target:  5'- gCCaGGCGC--GugGCCCUGGCccugGCCGCg -3'
miRNA:   3'- -GGaCUGCGacCugUGGGGCCG----CGGCG- -5'
30882 3' -62 NC_006552.1 + 54566 0.67 0.397122
Target:  5'- gCCUGGUGaucgUGGACACCgccaCGGCgaagGCCGCc -3'
miRNA:   3'- -GGACUGCg---ACCUGUGGg---GCCG----CGGCG- -5'
30882 3' -62 NC_006552.1 + 55922 0.71 0.216971
Target:  5'- gCCUGuCGCcGGAgAUCCCGGCGgacaagCGCa -3'
miRNA:   3'- -GGACuGCGaCCUgUGGGGCCGCg-----GCG- -5'
30882 3' -62 NC_006552.1 + 59059 0.69 0.289729
Target:  5'- --cGAgGCUGG-CGCUCUGcGCGUCGCu -3'
miRNA:   3'- ggaCUgCGACCuGUGGGGC-CGCGGCG- -5'
30882 3' -62 NC_006552.1 + 60292 0.67 0.380298
Target:  5'- gCUGGCcCUGGGCaucgGCCCCugGGUGuuCCGCg -3'
miRNA:   3'- gGACUGcGACCUG----UGGGG--CCGC--GGCG- -5'
30882 3' -62 NC_006552.1 + 60336 0.68 0.363957
Target:  5'- cCCUGAUGCcGGACAUUgaguggCCGGCgaagggccaGUCGCu -3'
miRNA:   3'- -GGACUGCGaCCUGUGG------GGCCG---------CGGCG- -5'
30882 3' -62 NC_006552.1 + 61632 0.71 0.216971
Target:  5'- gCCUGAU-CUGGAUGCCCgaGGCcGCCGg -3'
miRNA:   3'- -GGACUGcGACCUGUGGGg-CCG-CGGCg -5'
30882 3' -62 NC_006552.1 + 62435 0.72 0.196439
Target:  5'- cCCcGACGUgcccgccGGCGuuCCGGCGCCGCu -3'
miRNA:   3'- -GGaCUGCGac-----CUGUggGGCCGCGGCG- -5'
30882 3' -62 NC_006552.1 + 62955 0.68 0.325273
Target:  5'- gCUGACGCgcacgaACUggCCGGCGCCGUu -3'
miRNA:   3'- gGACUGCGaccug-UGG--GGCCGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.