miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30883 3' -56.4 NC_006552.1 + 60803 0.66 0.716386
Target:  5'- cCgGCCUGCACGc---GCGCaucaccugccccUACGGCg -3'
miRNA:   3'- -GgUGGACGUGCuacuCGCG------------AUGCCGa -5'
30883 3' -56.4 NC_006552.1 + 61011 0.66 0.705845
Target:  5'- uUCGCCUGCugGuacgccgaacuUGAucagGCGCgcugGCGGCc -3'
miRNA:   3'- -GGUGGACGugCu----------ACU----CGCGa---UGCCGa -5'
30883 3' -56.4 NC_006552.1 + 9153 0.66 0.705845
Target:  5'- gUCAcCCUGCGCGu--AGcCGCUcGCGGCa -3'
miRNA:   3'- -GGU-GGACGUGCuacUC-GCGA-UGCCGa -5'
30883 3' -56.4 NC_006552.1 + 10759 0.66 0.702669
Target:  5'- gCugCUGCGCGGUgcucagggcaugcaGAuugGCGCcgACGGCa -3'
miRNA:   3'- gGugGACGUGCUA--------------CU---CGCGa-UGCCGa -5'
30883 3' -56.4 NC_006552.1 + 14006 0.66 0.695235
Target:  5'- gCugCUGCuguuCGAgauaccgGAGUagcugGCUGCGGCUu -3'
miRNA:   3'- gGugGACGu---GCUa------CUCG-----CGAUGCCGA- -5'
30883 3' -56.4 NC_006552.1 + 24924 0.66 0.684565
Target:  5'- aCCGCCUGC-CGAccgcUGGgcagaucccaacGCGCUucaGGCUg -3'
miRNA:   3'- -GGUGGACGuGCU----ACU------------CGCGAug-CCGA- -5'
30883 3' -56.4 NC_006552.1 + 2908 0.66 0.673847
Target:  5'- aUCACC-GC-CGAU-AGCGCcgGCGGCa -3'
miRNA:   3'- -GGUGGaCGuGCUAcUCGCGa-UGCCGa -5'
30883 3' -56.4 NC_006552.1 + 27993 0.66 0.673847
Target:  5'- aCCGCCUGaucaacCAUGAUGuucugcGGCGagUACGGCg -3'
miRNA:   3'- -GGUGGAC------GUGCUAC------UCGCg-AUGCCGa -5'
30883 3' -56.4 NC_006552.1 + 24549 0.67 0.652307
Target:  5'- aCCACCUGCAUGAcuucaGCcAUGGCa -3'
miRNA:   3'- -GGUGGACGUGCUacucgCGaUGCCGa -5'
30883 3' -56.4 NC_006552.1 + 38960 0.67 0.652307
Target:  5'- aCGCCaGCGCGAUGuuguGCGCca-GGUUg -3'
miRNA:   3'- gGUGGaCGUGCUACu---CGCGaugCCGA- -5'
30883 3' -56.4 NC_006552.1 + 14652 0.67 0.630695
Target:  5'- uCCGCCUGCGuCGGuuUGAGgGUaucUGCGGg- -3'
miRNA:   3'- -GGUGGACGU-GCU--ACUCgCG---AUGCCga -5'
30883 3' -56.4 NC_006552.1 + 20449 0.67 0.630695
Target:  5'- cCCugCUGCACGgcGAaGCGCa--GGUUc -3'
miRNA:   3'- -GGugGACGUGCuaCU-CGCGaugCCGA- -5'
30883 3' -56.4 NC_006552.1 + 5131 0.67 0.609088
Target:  5'- gCACCUGCACGgcGAugcauuGCGCaUGCcGCUc -3'
miRNA:   3'- gGUGGACGUGCuaCU------CGCG-AUGcCGA- -5'
30883 3' -56.4 NC_006552.1 + 8132 0.67 0.609088
Target:  5'- gCCAUCUGCGCcaGGUGGucGCGCaguaucGCGGCc -3'
miRNA:   3'- -GGUGGACGUG--CUACU--CGCGa-----UGCCGa -5'
30883 3' -56.4 NC_006552.1 + 2034 0.67 0.609088
Target:  5'- cCUAUCUGCGCcuggGAcaggcgcuUGAGCGCgcCGGCg -3'
miRNA:   3'- -GGUGGACGUG----CU--------ACUCGCGauGCCGa -5'
30883 3' -56.4 NC_006552.1 + 38249 0.68 0.576842
Target:  5'- gCGCCgGUcUGcgGAucGCGCUGCGGCUc -3'
miRNA:   3'- gGUGGaCGuGCuaCU--CGCGAUGCCGA- -5'
30883 3' -56.4 NC_006552.1 + 35642 0.68 0.576842
Target:  5'- -gGCCUcguagaucGCAUucaGGUGGGCGCUcGCGGCg -3'
miRNA:   3'- ggUGGA--------CGUG---CUACUCGCGA-UGCCGa -5'
30883 3' -56.4 NC_006552.1 + 49257 0.68 0.576842
Target:  5'- aCGCCUGUAC--UGGcacGgGCUGCGGCg -3'
miRNA:   3'- gGUGGACGUGcuACU---CgCGAUGCCGa -5'
30883 3' -56.4 NC_006552.1 + 57958 0.68 0.566171
Target:  5'- uUCACCUGCugGAgggGAuGgGCUACcaGGUg -3'
miRNA:   3'- -GGUGGACGugCUa--CU-CgCGAUG--CCGa -5'
30883 3' -56.4 NC_006552.1 + 15326 0.68 0.555551
Target:  5'- cCCACCUcuccgcgacGCACGGccUGcAGCGCcGCaGGCUg -3'
miRNA:   3'- -GGUGGA---------CGUGCU--AC-UCGCGaUG-CCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.