Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30883 | 3' | -56.4 | NC_006552.1 | + | 60803 | 0.66 | 0.716386 |
Target: 5'- cCgGCCUGCACGc---GCGCaucaccugccccUACGGCg -3' miRNA: 3'- -GgUGGACGUGCuacuCGCG------------AUGCCGa -5' |
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30883 | 3' | -56.4 | NC_006552.1 | + | 35929 | 0.69 | 0.503467 |
Target: 5'- -uGCCUGCGCGGccuGgGCUugGGCc -3' miRNA: 3'- ggUGGACGUGCUacuCgCGAugCCGa -5' |
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30883 | 3' | -56.4 | NC_006552.1 | + | 52476 | 0.69 | 0.513727 |
Target: 5'- aCGCCaGCGCG-UGGGCaacCUGCGGCc -3' miRNA: 3'- gGUGGaCGUGCuACUCGc--GAUGCCGa -5' |
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30883 | 3' | -56.4 | NC_006552.1 | + | 59458 | 0.69 | 0.524071 |
Target: 5'- cCCACUUGgGCGGcUGAGCuGCUGgugaGGCg -3' miRNA: 3'- -GGUGGACgUGCU-ACUCG-CGAUg---CCGa -5' |
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30883 | 3' | -56.4 | NC_006552.1 | + | 4804 | 0.69 | 0.533449 |
Target: 5'- cCCACCUGCggcggggGCGAUGcgcacGCGCacaggGCGGUc -3' miRNA: 3'- -GGUGGACG-------UGCUACu----CGCGa----UGCCGa -5' |
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30883 | 3' | -56.4 | NC_006552.1 | + | 58391 | 0.68 | 0.54499 |
Target: 5'- -gACCgGCuACGGUGAGCGCgaagGGCa -3' miRNA: 3'- ggUGGaCG-UGCUACUCGCGaug-CCGa -5' |
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30883 | 3' | -56.4 | NC_006552.1 | + | 15326 | 0.68 | 0.555551 |
Target: 5'- cCCACCUcuccgcgacGCACGGccUGcAGCGCcGCaGGCUg -3' miRNA: 3'- -GGUGGA---------CGUGCU--AC-UCGCGaUG-CCGA- -5' |
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30883 | 3' | -56.4 | NC_006552.1 | + | 57958 | 0.68 | 0.566171 |
Target: 5'- uUCACCUGCugGAgggGAuGgGCUACcaGGUg -3' miRNA: 3'- -GGUGGACGugCUa--CU-CgCGAUG--CCGa -5' |
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30883 | 3' | -56.4 | NC_006552.1 | + | 35642 | 0.68 | 0.576842 |
Target: 5'- -gGCCUcguagaucGCAUucaGGUGGGCGCUcGCGGCg -3' miRNA: 3'- ggUGGA--------CGUG---CUACUCGCGA-UGCCGa -5' |
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30883 | 3' | -56.4 | NC_006552.1 | + | 44631 | 0.69 | 0.492285 |
Target: 5'- cCCACCcgGUcaccACGccccuucAUGAGCGgUGCGGCUa -3' miRNA: 3'- -GGUGGa-CG----UGC-------UACUCGCgAUGCCGA- -5' |
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30883 | 3' | -56.4 | NC_006552.1 | + | 32199 | 0.7 | 0.483222 |
Target: 5'- gCACCgGCAUGGUcGGGCGCgacauauCGGCc -3' miRNA: 3'- gGUGGaCGUGCUA-CUCGCGau-----GCCGa -5' |
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30883 | 3' | -56.4 | NC_006552.1 | + | 51847 | 0.7 | 0.473248 |
Target: 5'- aCCGCCUgGCcuuCGAgcaagcgGAGCGCcaGCGGCa -3' miRNA: 3'- -GGUGGA-CGu--GCUa------CUCGCGa-UGCCGa -5' |
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30883 | 3' | -56.4 | NC_006552.1 | + | 37819 | 0.74 | 0.258119 |
Target: 5'- gCAUCUGCGCGAucUGGGCGC--CGGCc -3' miRNA: 3'- gGUGGACGUGCU--ACUCGCGauGCCGa -5' |
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30883 | 3' | -56.4 | NC_006552.1 | + | 26070 | 0.73 | 0.292363 |
Target: 5'- aCCGgCUGCACGAagGuuauGCGCUGgGGCa -3' miRNA: 3'- -GGUgGACGUGCUa-Cu---CGCGAUgCCGa -5' |
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30883 | 3' | -56.4 | NC_006552.1 | + | 60030 | 0.73 | 0.298892 |
Target: 5'- gCCACCUGCugGcGUGAcgugguuggggcuGCGCUcgaggccuGCGGCg -3' miRNA: 3'- -GGUGGACGugC-UACU-------------CGCGA--------UGCCGa -5' |
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30883 | 3' | -56.4 | NC_006552.1 | + | 32481 | 0.72 | 0.362708 |
Target: 5'- gCCACCgaacUGguCGAUGcGCGCguggACGGCa -3' miRNA: 3'- -GGUGG----ACguGCUACuCGCGa---UGCCGa -5' |
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30883 | 3' | -56.4 | NC_006552.1 | + | 63171 | 0.71 | 0.388628 |
Target: 5'- -aACCUGCcgACGAUguucgGAGCGCUGCaaGGCg -3' miRNA: 3'- ggUGGACG--UGCUA-----CUCGCGAUG--CCGa -5' |
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30883 | 3' | -56.4 | NC_006552.1 | + | 52939 | 0.7 | 0.434437 |
Target: 5'- aCCGCCUGCGCc---GGCGCccgccgccggUGCGGCa -3' miRNA: 3'- -GGUGGACGUGcuacUCGCG----------AUGCCGa -5' |
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30883 | 3' | -56.4 | NC_006552.1 | + | 44575 | 0.7 | 0.463378 |
Target: 5'- gCUGCCUgGCACGAgUGAgcagGCGCUcguagGCGGCa -3' miRNA: 3'- -GGUGGA-CGUGCU-ACU----CGCGA-----UGCCGa -5' |
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30883 | 3' | -56.4 | NC_006552.1 | + | 20057 | 0.7 | 0.463378 |
Target: 5'- aCGCCUGCACGucu-GCGCgguaGGCg -3' miRNA: 3'- gGUGGACGUGCuacuCGCGaug-CCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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