miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30883 5' -53.7 NC_006552.1 + 7691 0.67 0.801768
Target:  5'- aCCAGCG-AUGcCCUUUcgGUGaauaAGCCGGc -3'
miRNA:   3'- -GGUCGCgUAUuGGAAG--CACg---UCGGCC- -5'
30883 5' -53.7 NC_006552.1 + 8028 0.71 0.579917
Target:  5'- gCGGUGCAUAGCCcUCGcccUGCAaCUGGg -3'
miRNA:   3'- gGUCGCGUAUUGGaAGC---ACGUcGGCC- -5'
30883 5' -53.7 NC_006552.1 + 9157 0.67 0.801768
Target:  5'- cCCuGCGCGUAGCCgcUCGcgGCAuCCGc -3'
miRNA:   3'- -GGuCGCGUAUUGGa-AGCa-CGUcGGCc -5'
30883 5' -53.7 NC_006552.1 + 10849 0.71 0.569118
Target:  5'- gCGGCGCugccGACuCUUCG-GCuGCCGGc -3'
miRNA:   3'- gGUCGCGua--UUG-GAAGCaCGuCGGCC- -5'
30883 5' -53.7 NC_006552.1 + 10921 0.66 0.830416
Target:  5'- gUAGCGCuggguccauaaacgAACCUUcCG-GCAGCCGu -3'
miRNA:   3'- gGUCGCGua------------UUGGAA-GCaCGUCGGCc -5'
30883 5' -53.7 NC_006552.1 + 11334 0.67 0.801768
Target:  5'- gCGGCGUcgAUGGCUUccUCGgugacgGCGGCCGa -3'
miRNA:   3'- gGUCGCG--UAUUGGA--AGCa-----CGUCGGCc -5'
30883 5' -53.7 NC_006552.1 + 12944 0.72 0.505638
Target:  5'- gCCAGCGCGcUGGCCUUggccuggcggugCGUucgaggccaGCAGCCGa -3'
miRNA:   3'- -GGUCGCGU-AUUGGAA------------GCA---------CGUCGGCc -5'
30883 5' -53.7 NC_006552.1 + 15470 0.67 0.772443
Target:  5'- gCCAGCGaUAcAGCCggUUGUGCGGCUu- -3'
miRNA:   3'- -GGUCGC-GUaUUGGa-AGCACGUCGGcc -5'
30883 5' -53.7 NC_006552.1 + 17545 0.68 0.731396
Target:  5'- gCGGCGCGg--UCUUCGggaGCAGCCu- -3'
miRNA:   3'- gGUCGCGUauuGGAAGCa--CGUCGGcc -5'
30883 5' -53.7 NC_006552.1 + 18264 0.69 0.688782
Target:  5'- uCCAGCGCu---CCggUUGgcgcaccaGCAGCCGGc -3'
miRNA:   3'- -GGUCGCGuauuGGa-AGCa-------CGUCGGCC- -5'
30883 5' -53.7 NC_006552.1 + 21168 0.69 0.71024
Target:  5'- -aGGCGCAUccGGCCg-CGUcGguGCCGGc -3'
miRNA:   3'- ggUCGCGUA--UUGGaaGCA-CguCGGCC- -5'
30883 5' -53.7 NC_006552.1 + 21495 0.68 0.720862
Target:  5'- uCCAGCGgGUAGCUguaggUCGcUGCGcuGCCGc -3'
miRNA:   3'- -GGUCGCgUAUUGGa----AGC-ACGU--CGGCc -5'
30883 5' -53.7 NC_006552.1 + 21675 0.71 0.547679
Target:  5'- uCCAGCGCAUAAacgccgUCUUCG-GCGauGCCGu -3'
miRNA:   3'- -GGUCGCGUAUU------GGAAGCaCGU--CGGCc -5'
30883 5' -53.7 NC_006552.1 + 22187 0.69 0.69847
Target:  5'- aCCAGgGCGUcAUCgaCGUGCAggacacgaaggguGCCGGu -3'
miRNA:   3'- -GGUCgCGUAuUGGaaGCACGU-------------CGGCC- -5'
30883 5' -53.7 NC_006552.1 + 25179 0.67 0.772443
Target:  5'- aCCAGCGCAcccgUGGugccacCCUUgGUGCuGuuGGu -3'
miRNA:   3'- -GGUCGCGU----AUU------GGAAgCACGuCggCC- -5'
30883 5' -53.7 NC_006552.1 + 26878 0.7 0.623456
Target:  5'- gCAGCGCGgcAUCUUCG-GCGacguuguugauGCCGGc -3'
miRNA:   3'- gGUCGCGUauUGGAAGCaCGU-----------CGGCC- -5'
30883 5' -53.7 NC_006552.1 + 35331 0.7 0.645306
Target:  5'- gCGGCG-AUGGCCUcgaaUCGguUGcCAGCCGGa -3'
miRNA:   3'- gGUCGCgUAUUGGA----AGC--AC-GUCGGCC- -5'
30883 5' -53.7 NC_006552.1 + 35984 0.66 0.863623
Target:  5'- aCCAGCuucuCGUAGCCgauggUGUGCuuGCCGu -3'
miRNA:   3'- -GGUCGc---GUAUUGGaa---GCACGu-CGGCc -5'
30883 5' -53.7 NC_006552.1 + 36166 0.67 0.782375
Target:  5'- aUCGGCGC-UGGCC-UCGccaGCAucGCCGGc -3'
miRNA:   3'- -GGUCGCGuAUUGGaAGCa--CGU--CGGCC- -5'
30883 5' -53.7 NC_006552.1 + 37970 0.66 0.846162
Target:  5'- gCCAGgGCGUcuugcacGGCCUggUCGaucUGCuGCUGGa -3'
miRNA:   3'- -GGUCgCGUA-------UUGGA--AGC---ACGuCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.