miRNA display CGI


Results 21 - 30 of 30 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30883 5' -53.7 NC_006552.1 + 38868 0.71 0.547679
Target:  5'- aCGGCGUggGACCaUCGUGCAGgCa- -3'
miRNA:   3'- gGUCGCGuaUUGGaAGCACGUCgGcc -5'
30883 5' -53.7 NC_006552.1 + 38914 0.68 0.720862
Target:  5'- gCGGCGCAccggGAuaccgucaccuUCUUCGgagaaaUGCGGCCGGa -3'
miRNA:   3'- gGUCGCGUa---UU-----------GGAAGC------ACGUCGGCC- -5'
30883 5' -53.7 NC_006552.1 + 39416 0.69 0.71024
Target:  5'- cCCAGC-CAauACCgcacgCGaucUGCGGCCGGa -3'
miRNA:   3'- -GGUCGcGUauUGGaa---GC---ACGUCGGCC- -5'
30883 5' -53.7 NC_006552.1 + 40370 0.72 0.516028
Target:  5'- -uGGCGCA--GCCaUCGcUGCGGCCGa -3'
miRNA:   3'- ggUCGCGUauUGGaAGC-ACGUCGGCc -5'
30883 5' -53.7 NC_006552.1 + 52478 0.69 0.667109
Target:  5'- gCCAGCGCGUGGgCaaCcUGCGGCCa- -3'
miRNA:   3'- -GGUCGCGUAUUgGaaGcACGUCGGcc -5'
30883 5' -53.7 NC_006552.1 + 52948 0.67 0.801768
Target:  5'- gCCGGCGCcc-GCCgccgGUGCGGCaucCGGg -3'
miRNA:   3'- -GGUCGCGuauUGGaag-CACGUCG---GCC- -5'
30883 5' -53.7 NC_006552.1 + 53785 0.68 0.741833
Target:  5'- -gAGCGCAccgagUGgcACCgggUCGUGCucuuuGGCCGGc -3'
miRNA:   3'- ggUCGCGU-----AU--UGGa--AGCACG-----UCGGCC- -5'
30883 5' -53.7 NC_006552.1 + 54555 0.67 0.801768
Target:  5'- gCCGGCGCAaGGCCUggugaUCGUGgAcaccGCCa- -3'
miRNA:   3'- -GGUCGCGUaUUGGA-----AGCACgU----CGGcc -5'
30883 5' -53.7 NC_006552.1 + 60057 0.66 0.863623
Target:  5'- gCuGCGCucgaGGCCUgCG-GCGGUCGGg -3'
miRNA:   3'- gGuCGCGua--UUGGAaGCaCGUCGGCC- -5'
30883 5' -53.7 NC_006552.1 + 63031 0.67 0.776434
Target:  5'- cCCAGCGCAaccUGGCCgccauccucgaccugUUCGcccaGguGCUGGg -3'
miRNA:   3'- -GGUCGCGU---AUUGG---------------AAGCa---CguCGGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.