miRNA display CGI


Results 41 - 60 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30906 5' -63.6 NC_006552.1 + 2896 0.68 0.267275
Target:  5'- gGGUUCGUcaucaUCACCGCCGauagcGCCGGCg -3'
miRNA:   3'- -UCGAGCGc----GGUGGCGGCcua--CGGCCG- -5'
30906 5' -63.6 NC_006552.1 + 32689 0.68 0.260956
Target:  5'- uGCUUGguguCGUCGCCgGCCGGcgcgggGCCGGUg -3'
miRNA:   3'- uCGAGC----GCGGUGG-CGGCCua----CGGCCG- -5'
30906 5' -63.6 NC_006552.1 + 13895 0.68 0.260956
Target:  5'- uGGCUUGCuCCACgGCCGccUGCUGaGCa -3'
miRNA:   3'- -UCGAGCGcGGUGgCGGCcuACGGC-CG- -5'
30906 5' -63.6 NC_006552.1 + 52311 0.68 0.260956
Target:  5'- cGGCcUGacuaGCCACCucgcGCCGGccacGCCGGCa -3'
miRNA:   3'- -UCGaGCg---CGGUGG----CGGCCua--CGGCCG- -5'
30906 5' -63.6 NC_006552.1 + 59603 0.68 0.260331
Target:  5'- cGGCUcaagCGCagGCCGCCuggcagaacucggGCCGGGaggUGCUGGCu -3'
miRNA:   3'- -UCGA----GCG--CGGUGG-------------CGGCCU---ACGGCCG- -5'
30906 5' -63.6 NC_006552.1 + 25793 0.68 0.254759
Target:  5'- aGGUaC-CGgCACgGCCGGugAUGCCGGCg -3'
miRNA:   3'- -UCGaGcGCgGUGgCGGCC--UACGGCCG- -5'
30906 5' -63.6 NC_006552.1 + 52170 0.68 0.254759
Target:  5'- cGCUCaucgcCGCCAUCGCCGaagGCCuGGCc -3'
miRNA:   3'- uCGAGc----GCGGUGGCGGCcuaCGG-CCG- -5'
30906 5' -63.6 NC_006552.1 + 11258 0.68 0.248683
Target:  5'- uGCUCGCGgaUCG-CGUCGGccaauauggcccAUGCCGGCg -3'
miRNA:   3'- uCGAGCGC--GGUgGCGGCC------------UACGGCCG- -5'
30906 5' -63.6 NC_006552.1 + 10382 0.69 0.236892
Target:  5'- gAGUUCGUGCaagAUCGCCGaggccaccucGGUGCgCGGCa -3'
miRNA:   3'- -UCGAGCGCGg--UGGCGGC----------CUACG-GCCG- -5'
30906 5' -63.6 NC_006552.1 + 13786 0.69 0.233447
Target:  5'- uGCUUGCuguucaguccagaacGCCcgacaacauaGCCGCUGuaGGUGCCGGCg -3'
miRNA:   3'- uCGAGCG---------------CGG----------UGGCGGC--CUACGGCCG- -5'
30906 5' -63.6 NC_006552.1 + 44069 0.69 0.225572
Target:  5'- cGCccggCGCGCUuccucuucGCCGCCGcGcucuugGCCGGCg -3'
miRNA:   3'- uCGa---GCGCGG--------UGGCGGC-Cua----CGGCCG- -5'
30906 5' -63.6 NC_006552.1 + 44407 0.69 0.225572
Target:  5'- cGGCgaUUGCGCUGCCgGCCGGcgaaaCCGGCu -3'
miRNA:   3'- -UCG--AGCGCGGUGG-CGGCCuac--GGCCG- -5'
30906 5' -63.6 NC_006552.1 + 54291 0.69 0.223915
Target:  5'- cGGCuUCGCGCCGCCGgUCGGcaagggugacgcaccGCUGGUa -3'
miRNA:   3'- -UCG-AGCGCGGUGGC-GGCCua-------------CGGCCG- -5'
30906 5' -63.6 NC_006552.1 + 14868 0.69 0.220087
Target:  5'- aGGCUCGCcaGgUGCUGCCGGA--UCGGCa -3'
miRNA:   3'- -UCGAGCG--CgGUGGCGGCCUacGGCCG- -5'
30906 5' -63.6 NC_006552.1 + 36077 0.69 0.220087
Target:  5'- uGUUgGuCGCCACCaGCCGaagcGCCGGCg -3'
miRNA:   3'- uCGAgC-GCGGUGG-CGGCcua-CGGCCG- -5'
30906 5' -63.6 NC_006552.1 + 63812 0.7 0.204309
Target:  5'- uAGCUUcgGCGCCcagGCCaGCCaGccGCCGGCg -3'
miRNA:   3'- -UCGAG--CGCGG---UGG-CGGcCuaCGGCCG- -5'
30906 5' -63.6 NC_006552.1 + 23245 0.7 0.204309
Target:  5'- cGGCUCaCGCCGCCGaCGcaccaaaGUGUCGGCg -3'
miRNA:   3'- -UCGAGcGCGGUGGCgGCc------UACGGCCG- -5'
30906 5' -63.6 NC_006552.1 + 34151 0.7 0.199272
Target:  5'- aGGCUUGCGCCAgaGCCuGGccGCCcagcagcagGGCg -3'
miRNA:   3'- -UCGAGCGCGGUggCGG-CCuaCGG---------CCG- -5'
30906 5' -63.6 NC_006552.1 + 24701 0.7 0.199272
Target:  5'- cGGCggaaGCGCCGCUuUCGGGUcguaggccaccaGCCGGCg -3'
miRNA:   3'- -UCGag--CGCGGUGGcGGCCUA------------CGGCCG- -5'
30906 5' -63.6 NC_006552.1 + 51020 0.7 0.194343
Target:  5'- aAGCUgaaagaGCGCC-UgGCC-GAUGCCGGCg -3'
miRNA:   3'- -UCGAg-----CGCGGuGgCGGcCUACGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.