miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30910 5' -59.3 NC_006552.1 + 25884 0.76 0.120441
Target:  5'- cGCUAGCCaCAcGGCGACCGGCgaGCCAUc -3'
miRNA:   3'- -UGGUUGGcGUuCCGCUGGCCG--UGGUA- -5'
30910 5' -59.3 NC_006552.1 + 54051 0.72 0.222047
Target:  5'- cACCAGCCGCAAccGGCGACCG--ACUAc -3'
miRNA:   3'- -UGGUUGGCGUU--CCGCUGGCcgUGGUa -5'
30910 5' -59.3 NC_006552.1 + 58276 0.71 0.245859
Target:  5'- uGCCAAUCGCGaacuggucGGGCGaACUGGC-CCAg -3'
miRNA:   3'- -UGGUUGGCGU--------UCCGC-UGGCCGuGGUa -5'
30910 5' -59.3 NC_006552.1 + 21175 0.7 0.285498
Target:  5'- uCCGGCCGCGucGGUG-CCGGCACa-- -3'
miRNA:   3'- uGGUUGGCGUu-CCGCuGGCCGUGgua -5'
30910 5' -59.3 NC_006552.1 + 33740 0.7 0.292575
Target:  5'- cGCCAACCGCcAGcGCGGCggCGGCAUUg- -3'
miRNA:   3'- -UGGUUGGCGuUC-CGCUG--GCCGUGGua -5'
30910 5' -59.3 NC_006552.1 + 4151 0.7 0.292575
Target:  5'- uACCGAUCGCAAGGCuggauguuCCcGCGCCAa -3'
miRNA:   3'- -UGGUUGGCGUUCCGcu------GGcCGUGGUa -5'
30910 5' -59.3 NC_006552.1 + 53773 0.7 0.299789
Target:  5'- gGCCAGCaGCAGGaGCGcACCgaguGGCACCGg -3'
miRNA:   3'- -UGGUUGgCGUUC-CGC-UGG----CCGUGGUa -5'
30910 5' -59.3 NC_006552.1 + 63485 0.7 0.299789
Target:  5'- uGCCGGCCGCc-GGCG-CCGGagcaACCGg -3'
miRNA:   3'- -UGGUUGGCGuuCCGCuGGCCg---UGGUa -5'
30910 5' -59.3 NC_006552.1 + 63989 0.7 0.314626
Target:  5'- uACCuGGCCGCcaAGGGCcuGGCCGGCACa-- -3'
miRNA:   3'- -UGG-UUGGCG--UUCCG--CUGGCCGUGgua -5'
30910 5' -59.3 NC_006552.1 + 13832 0.7 0.314626
Target:  5'- uGCCGGCgCGCAcguucaucAGGCG-CCGGUACUg- -3'
miRNA:   3'- -UGGUUG-GCGU--------UCCGCuGGCCGUGGua -5'
30910 5' -59.3 NC_006552.1 + 16787 0.69 0.322251
Target:  5'- cGCCAGCCGCGccGGCuGCCacaGGUGCCAa -3'
miRNA:   3'- -UGGUUGGCGUu-CCGcUGG---CCGUGGUa -5'
30910 5' -59.3 NC_006552.1 + 20933 0.69 0.337911
Target:  5'- uCC-ACCGUGgugucgauguccGGGCGuCCGGCACCGg -3'
miRNA:   3'- uGGuUGGCGU------------UCCGCuGGCCGUGGUa -5'
30910 5' -59.3 NC_006552.1 + 31258 0.69 0.337911
Target:  5'- cGCC-GCCGUugGGGGUGAUCGGCagGCCGg -3'
miRNA:   3'- -UGGuUGGCG--UUCCGCUGGCCG--UGGUa -5'
30910 5' -59.3 NC_006552.1 + 33381 0.69 0.345946
Target:  5'- gGCCGGCCcuucGUAGGGCGGC-GGCGCUu- -3'
miRNA:   3'- -UGGUUGG----CGUUCCGCUGgCCGUGGua -5'
30910 5' -59.3 NC_006552.1 + 61035 0.69 0.354117
Target:  5'- gAUCAGgCGCGcuGGCGGCCGaGCAuCCAUa -3'
miRNA:   3'- -UGGUUgGCGUu-CCGCUGGC-CGU-GGUA- -5'
30910 5' -59.3 NC_006552.1 + 25006 0.68 0.370864
Target:  5'- gGCCAGCCGCucgacaGCGG-CGGCAUCGUc -3'
miRNA:   3'- -UGGUUGGCGuuc---CGCUgGCCGUGGUA- -5'
30910 5' -59.3 NC_006552.1 + 41426 0.68 0.379439
Target:  5'- uUCGGCCGCGuccguGGgGAgCGGCAUCAg -3'
miRNA:   3'- uGGUUGGCGUu----CCgCUgGCCGUGGUa -5'
30910 5' -59.3 NC_006552.1 + 32076 0.68 0.39698
Target:  5'- uGCCAGCC-CGGucGGgGGuuGGCACCAg -3'
miRNA:   3'- -UGGUUGGcGUU--CCgCUggCCGUGGUa -5'
30910 5' -59.3 NC_006552.1 + 26407 0.68 0.39698
Target:  5'- cGCCGGcaucggucacuuCCGCgAAGGCGAUcagcgaCGGCGCCGa -3'
miRNA:   3'- -UGGUU------------GGCG-UUCCGCUG------GCCGUGGUa -5'
30910 5' -59.3 NC_006552.1 + 22354 0.67 0.433585
Target:  5'- cACCGccGCCGUAucGGUGugCaGCACCAg -3'
miRNA:   3'- -UGGU--UGGCGUu-CCGCugGcCGUGGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.