Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30910 | 5' | -59.3 | NC_006552.1 | + | 62954 | 0.66 | 0.522482 |
Target: 5'- cGCUGACgCGCAcGaacUGGCCGGCGCCGUu -3' miRNA: 3'- -UGGUUG-GCGUuCc--GCUGGCCGUGGUA- -5' |
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30910 | 5' | -59.3 | NC_006552.1 | + | 31258 | 0.69 | 0.337911 |
Target: 5'- cGCC-GCCGUugGGGGUGAUCGGCagGCCGg -3' miRNA: 3'- -UGGuUGGCG--UUCCGCUGGCCG--UGGUa -5' |
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30910 | 5' | -59.3 | NC_006552.1 | + | 33381 | 0.69 | 0.345946 |
Target: 5'- gGCCGGCCcuucGUAGGGCGGC-GGCGCUu- -3' miRNA: 3'- -UGGUUGG----CGUUCCGCUGgCCGUGGua -5' |
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30910 | 5' | -59.3 | NC_006552.1 | + | 61035 | 0.69 | 0.354117 |
Target: 5'- gAUCAGgCGCGcuGGCGGCCGaGCAuCCAUa -3' miRNA: 3'- -UGGUUgGCGUu-CCGCUGGC-CGU-GGUA- -5' |
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30910 | 5' | -59.3 | NC_006552.1 | + | 25006 | 0.68 | 0.370864 |
Target: 5'- gGCCAGCCGCucgacaGCGG-CGGCAUCGUc -3' miRNA: 3'- -UGGUUGGCGuuc---CGCUgGCCGUGGUA- -5' |
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30910 | 5' | -59.3 | NC_006552.1 | + | 41426 | 0.68 | 0.379439 |
Target: 5'- uUCGGCCGCGuccguGGgGAgCGGCAUCAg -3' miRNA: 3'- uGGUUGGCGUu----CCgCUgGCCGUGGUa -5' |
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30910 | 5' | -59.3 | NC_006552.1 | + | 32076 | 0.68 | 0.39698 |
Target: 5'- uGCCAGCC-CGGucGGgGGuuGGCACCAg -3' miRNA: 3'- -UGGUUGGcGUU--CCgCUggCCGUGGUa -5' |
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30910 | 5' | -59.3 | NC_006552.1 | + | 26407 | 0.68 | 0.39698 |
Target: 5'- cGCCGGcaucggucacuuCCGCgAAGGCGAUcagcgaCGGCGCCGa -3' miRNA: 3'- -UGGUU------------GGCG-UUCCGCUG------GCCGUGGUa -5' |
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30910 | 5' | -59.3 | NC_006552.1 | + | 22354 | 0.67 | 0.433585 |
Target: 5'- cACCGccGCCGUAucGGUGugCaGCACCAg -3' miRNA: 3'- -UGGU--UGGCGUu-CCGCugGcCGUGGUa -5' |
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30910 | 5' | -59.3 | NC_006552.1 | + | 20933 | 0.69 | 0.337911 |
Target: 5'- uCC-ACCGUGgugucgauguccGGGCGuCCGGCACCGg -3' miRNA: 3'- uGGuUGGCGU------------UCCGCuGGCCGUGGUa -5' |
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30910 | 5' | -59.3 | NC_006552.1 | + | 16787 | 0.69 | 0.322251 |
Target: 5'- cGCCAGCCGCGccGGCuGCCacaGGUGCCAa -3' miRNA: 3'- -UGGUUGGCGUu-CCGcUGG---CCGUGGUa -5' |
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30910 | 5' | -59.3 | NC_006552.1 | + | 13832 | 0.7 | 0.314626 |
Target: 5'- uGCCGGCgCGCAcguucaucAGGCG-CCGGUACUg- -3' miRNA: 3'- -UGGUUG-GCGU--------UCCGCuGGCCGUGGua -5' |
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30910 | 5' | -59.3 | NC_006552.1 | + | 54051 | 0.72 | 0.222047 |
Target: 5'- cACCAGCCGCAAccGGCGACCG--ACUAc -3' miRNA: 3'- -UGGUUGGCGUU--CCGCUGGCcgUGGUa -5' |
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30910 | 5' | -59.3 | NC_006552.1 | + | 58276 | 0.71 | 0.245859 |
Target: 5'- uGCCAAUCGCGaacuggucGGGCGaACUGGC-CCAg -3' miRNA: 3'- -UGGUUGGCGU--------UCCGC-UGGCCGuGGUa -5' |
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30910 | 5' | -59.3 | NC_006552.1 | + | 21175 | 0.7 | 0.285498 |
Target: 5'- uCCGGCCGCGucGGUG-CCGGCACa-- -3' miRNA: 3'- uGGUUGGCGUu-CCGCuGGCCGUGgua -5' |
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30910 | 5' | -59.3 | NC_006552.1 | + | 4151 | 0.7 | 0.292575 |
Target: 5'- uACCGAUCGCAAGGCuggauguuCCcGCGCCAa -3' miRNA: 3'- -UGGUUGGCGUUCCGcu------GGcCGUGGUa -5' |
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30910 | 5' | -59.3 | NC_006552.1 | + | 33740 | 0.7 | 0.292575 |
Target: 5'- cGCCAACCGCcAGcGCGGCggCGGCAUUg- -3' miRNA: 3'- -UGGUUGGCGuUC-CGCUG--GCCGUGGua -5' |
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30910 | 5' | -59.3 | NC_006552.1 | + | 53773 | 0.7 | 0.299789 |
Target: 5'- gGCCAGCaGCAGGaGCGcACCgaguGGCACCGg -3' miRNA: 3'- -UGGUUGgCGUUC-CGC-UGG----CCGUGGUa -5' |
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30910 | 5' | -59.3 | NC_006552.1 | + | 63485 | 0.7 | 0.299789 |
Target: 5'- uGCCGGCCGCc-GGCG-CCGGagcaACCGg -3' miRNA: 3'- -UGGUUGGCGuuCCGCuGGCCg---UGGUa -5' |
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30910 | 5' | -59.3 | NC_006552.1 | + | 63989 | 0.7 | 0.314626 |
Target: 5'- uACCuGGCCGCcaAGGGCcuGGCCGGCACa-- -3' miRNA: 3'- -UGG-UUGGCG--UUCCG--CUGGCCGUGgua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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