miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30911 3' -55.9 NC_006552.1 + 49318 0.66 0.705801
Target:  5'- --gCUGggaacgcUGGCCGACaAGCC-GCUGCg -3'
miRNA:   3'- augGACaa-----GCCGGUUG-UCGGaCGACG- -5'
30911 3' -55.9 NC_006552.1 + 63988 0.66 0.705801
Target:  5'- cUACCUGgcc-GCCAAgGGCCUGgCcgGCa -3'
miRNA:   3'- -AUGGACaagcCGGUUgUCGGAC-Ga-CG- -5'
30911 3' -55.9 NC_006552.1 + 9574 0.66 0.705801
Target:  5'- cGgCUG-UCGGCgAACugauGGCCcugGCUGCg -3'
miRNA:   3'- aUgGACaAGCCGgUUG----UCGGa--CGACG- -5'
30911 3' -55.9 NC_006552.1 + 63057 0.66 0.694967
Target:  5'- gACCUGUUCGcCCAGguGCUggGCaugGCc -3'
miRNA:   3'- aUGGACAAGCcGGUUguCGGa-CGa--CG- -5'
30911 3' -55.9 NC_006552.1 + 18873 0.66 0.684072
Target:  5'- gUGCgCUGa-CGGUgcaCAGCgagAGCCUGCUGCu -3'
miRNA:   3'- -AUG-GACaaGCCG---GUUG---UCGGACGACG- -5'
30911 3' -55.9 NC_006552.1 + 35769 0.66 0.684072
Target:  5'- aUACCUG--CGGCCAGCGcuuCCUcGCUGa -3'
miRNA:   3'- -AUGGACaaGCCGGUUGUc--GGA-CGACg -5'
30911 3' -55.9 NC_006552.1 + 59671 0.66 0.684072
Target:  5'- cGCCUGccucgcCGGCCAACGGCg-GUgaucgGCa -3'
miRNA:   3'- aUGGACaa----GCCGGUUGUCGgaCGa----CG- -5'
30911 3' -55.9 NC_006552.1 + 58928 0.66 0.684072
Target:  5'- cGCCuUGUaaCGGCCAGCcuuGCCacGUUGCg -3'
miRNA:   3'- aUGG-ACAa-GCCGGUUGu--CGGa-CGACG- -5'
30911 3' -55.9 NC_006552.1 + 35151 0.66 0.68298
Target:  5'- -cCCUGgcagagCGcgaacaaGCCGGCGGCCUGUUGg -3'
miRNA:   3'- auGGACaa----GC-------CGGUUGUCGGACGACg -5'
30911 3' -55.9 NC_006552.1 + 37841 0.66 0.673127
Target:  5'- gGCCUGcaUGGCacugaauGCGGCCUGCaccccgaucUGCa -3'
miRNA:   3'- aUGGACaaGCCGgu-----UGUCGGACG---------ACG- -5'
30911 3' -55.9 NC_006552.1 + 63377 0.66 0.673127
Target:  5'- cACCUGcgUCGGCCAcgccaaAGCCaUGaaGCa -3'
miRNA:   3'- aUGGACa-AGCCGGUug----UCGG-ACgaCG- -5'
30911 3' -55.9 NC_006552.1 + 60068 0.66 0.673127
Target:  5'- gGCCUGcggcggUCGGgccacucuCCAGCAGCUcuaUGcCUGCa -3'
miRNA:   3'- aUGGACa-----AGCC--------GGUUGUCGG---AC-GACG- -5'
30911 3' -55.9 NC_006552.1 + 12821 0.66 0.673127
Target:  5'- -gUCUGcgggUUGG-CGACAGCCUucuGCUGCg -3'
miRNA:   3'- auGGACa---AGCCgGUUGUCGGA---CGACG- -5'
30911 3' -55.9 NC_006552.1 + 13623 0.66 0.662143
Target:  5'- cGCCUugUCGGCaCG--GGCCUGCUcgGCg -3'
miRNA:   3'- aUGGAcaAGCCG-GUugUCGGACGA--CG- -5'
30911 3' -55.9 NC_006552.1 + 32120 0.67 0.640102
Target:  5'- -cCCUGgaUGGCguaCAGCGGCUUGCcggUGCa -3'
miRNA:   3'- auGGACaaGCCG---GUUGUCGGACG---ACG- -5'
30911 3' -55.9 NC_006552.1 + 20680 0.67 0.640102
Target:  5'- cGCCUGcUCGaugggcGCCGGCAGuCCUGUgccGCc -3'
miRNA:   3'- aUGGACaAGC------CGGUUGUC-GGACGa--CG- -5'
30911 3' -55.9 NC_006552.1 + 63647 0.67 0.607009
Target:  5'- --aCUcUUCaGCCGAgAGCCUGCUGg -3'
miRNA:   3'- augGAcAAGcCGGUUgUCGGACGACg -5'
30911 3' -55.9 NC_006552.1 + 18755 0.67 0.607009
Target:  5'- gGCCUGUgcaaUGGCCuguuGCuGCCgUGCcGCg -3'
miRNA:   3'- aUGGACAa---GCCGGu---UGuCGG-ACGaCG- -5'
30911 3' -55.9 NC_006552.1 + 35393 0.67 0.603707
Target:  5'- gGCCggcgGUUCGGUCuuggcuuuguugauGGCAGCCUGg-GCc -3'
miRNA:   3'- aUGGa---CAAGCCGG--------------UUGUCGGACgaCG- -5'
30911 3' -55.9 NC_006552.1 + 56617 0.67 0.59601
Target:  5'- aGCCUuucggCGGCgCGGCuucuGuCCUGCUGCg -3'
miRNA:   3'- aUGGAcaa--GCCG-GUUGu---C-GGACGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.