miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30918 5' -56.5 NC_006552.1 + 723 0.67 0.587734
Target:  5'- aACUCCgcGCCUUCUCC-GCgacgUGCAgCGCu -3'
miRNA:   3'- aUGAGG--UGGAAGGGGuCG----AUGUgGCG- -5'
30918 5' -56.5 NC_006552.1 + 4967 0.67 0.587734
Target:  5'- aGCUUgGCCUcagCCUUGGCguuCGCCGCu -3'
miRNA:   3'- aUGAGgUGGAa--GGGGUCGau-GUGGCG- -5'
30918 5' -56.5 NC_006552.1 + 7340 0.7 0.410954
Target:  5'- cUGCgCCAUCUgucgugcugcccgCCCCAGUUcCGCCGCa -3'
miRNA:   3'- -AUGaGGUGGAa------------GGGGUCGAuGUGGCG- -5'
30918 5' -56.5 NC_006552.1 + 8600 0.66 0.663859
Target:  5'- ---aCCGCCUuguugUCCUCAGCgccCACCGg -3'
miRNA:   3'- augaGGUGGA-----AGGGGUCGau-GUGGCg -5'
30918 5' -56.5 NC_006552.1 + 10264 0.72 0.342188
Target:  5'- -cCUCCACC-UCUCCAGCcagacgacgauagguCGCCGCa -3'
miRNA:   3'- auGAGGUGGaAGGGGUCGau-------------GUGGCG- -5'
30918 5' -56.5 NC_006552.1 + 11228 0.67 0.620318
Target:  5'- aGCUCCACCacUUCgGGCUccACGCCGg -3'
miRNA:   3'- aUGAGGUGGaaGGGgUCGA--UGUGGCg -5'
30918 5' -56.5 NC_006552.1 + 11992 0.75 0.219604
Target:  5'- gUAgUCCACCgucucggcgUCCaCCGGCU-CGCCGCg -3'
miRNA:   3'- -AUgAGGUGGa--------AGG-GGUCGAuGUGGCG- -5'
30918 5' -56.5 NC_006552.1 + 13215 0.68 0.544833
Target:  5'- gGCggUCGCC-UCCCCA-CUGCGCgCGCg -3'
miRNA:   3'- aUGa-GGUGGaAGGGGUcGAUGUG-GCG- -5'
30918 5' -56.5 NC_006552.1 + 14320 0.67 0.631212
Target:  5'- -cCUCgGCCUguaaccucuUUgCCAGC-ACGCCGCg -3'
miRNA:   3'- auGAGgUGGA---------AGgGGUCGaUGUGGCG- -5'
30918 5' -56.5 NC_006552.1 + 14624 0.69 0.472555
Target:  5'- gGCcuucgCCACCUUaUCCCGGCUGaacuCCGCc -3'
miRNA:   3'- aUGa----GGUGGAA-GGGGUCGAUgu--GGCG- -5'
30918 5' -56.5 NC_006552.1 + 15288 0.68 0.555475
Target:  5'- cUACUUCGCCacUgCCCAGCUuu-CCGCc -3'
miRNA:   3'- -AUGAGGUGGa-AgGGGUCGAuguGGCG- -5'
30918 5' -56.5 NC_006552.1 + 16776 0.68 0.523754
Target:  5'- cACcgCC-CCUUCgCCAGCcGCGCCGg -3'
miRNA:   3'- aUGa-GGuGGAAGgGGUCGaUGUGGCg -5'
30918 5' -56.5 NC_006552.1 + 19485 0.66 0.696243
Target:  5'- cGCUCUugCUUUCCgAacuGCUcGCGCUGCc -3'
miRNA:   3'- aUGAGGugGAAGGGgU---CGA-UGUGGCG- -5'
30918 5' -56.5 NC_006552.1 + 21644 0.68 0.566178
Target:  5'- gAUUCUGCCggCCaCCGGCUGgcuguCACCGUc -3'
miRNA:   3'- aUGAGGUGGaaGG-GGUCGAU-----GUGGCG- -5'
30918 5' -56.5 NC_006552.1 + 24549 0.66 0.642106
Target:  5'- ---aCCACCUgcaugaCUUCAGCcaugGCACCGCu -3'
miRNA:   3'- augaGGUGGAa-----GGGGUCGa---UGUGGCG- -5'
30918 5' -56.5 NC_006552.1 + 26060 0.67 0.609434
Target:  5'- ---gCCGCCaUCCaCCGGCUGCACgaagguuaugCGCu -3'
miRNA:   3'- augaGGUGGaAGG-GGUCGAUGUG----------GCG- -5'
30918 5' -56.5 NC_006552.1 + 29810 0.67 0.620318
Target:  5'- gGCgggCCGCCa--CCCAGCgugACGuuGCg -3'
miRNA:   3'- aUGa--GGUGGaagGGGUCGa--UGUggCG- -5'
30918 5' -56.5 NC_006552.1 + 31987 0.7 0.405437
Target:  5'- gUGCUCgGCgUgaaUCUCCGGCUGCGCgGUg -3'
miRNA:   3'- -AUGAGgUGgA---AGGGGUCGAUGUGgCG- -5'
30918 5' -56.5 NC_006552.1 + 42665 0.69 0.462616
Target:  5'- -uCUCgACCUUCgCCCAGC--CACCGg -3'
miRNA:   3'- auGAGgUGGAAG-GGGUCGauGUGGCg -5'
30918 5' -56.5 NC_006552.1 + 48928 0.67 0.59857
Target:  5'- --aUCCcccCCUUgCCCGGCUACgGCCGg -3'
miRNA:   3'- augAGGu--GGAAgGGGUCGAUG-UGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.