Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30918 | 5' | -56.5 | NC_006552.1 | + | 64150 | 0.67 | 0.620318 |
Target: 5'- aGCUCgCGCCg-CCCUGGCgcacGCGCCGa -3' miRNA: 3'- aUGAG-GUGGaaGGGGUCGa---UGUGGCg -5' |
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30918 | 5' | -56.5 | NC_006552.1 | + | 62030 | 0.68 | 0.534256 |
Target: 5'- -gUUCaACCgagUCCCCGGCUGgACCuGCu -3' miRNA: 3'- auGAGgUGGa--AGGGGUCGAUgUGG-CG- -5' |
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30918 | 5' | -56.5 | NC_006552.1 | + | 61857 | 0.7 | 0.424006 |
Target: 5'- aGCUCCGCCUgaguuacagCCCaGGCUgaauuGCGCCGg -3' miRNA: 3'- aUGAGGUGGAa--------GGGgUCGA-----UGUGGCg -5' |
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30918 | 5' | -56.5 | NC_006552.1 | + | 61566 | 0.7 | 0.443074 |
Target: 5'- cACUcgCCACCg-CCCCAGCggaugACCGCa -3' miRNA: 3'- aUGA--GGUGGaaGGGGUCGaug--UGGCG- -5' |
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30918 | 5' | -56.5 | NC_006552.1 | + | 56835 | 0.68 | 0.544833 |
Target: 5'- gUugUCCGCagCUUCCagggauUCGGCaGCGCCGCg -3' miRNA: 3'- -AugAGGUG--GAAGG------GGUCGaUGUGGCG- -5' |
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30918 | 5' | -56.5 | NC_006552.1 | + | 56640 | 0.71 | 0.396347 |
Target: 5'- --gUCCugCUgcggaaggCCCgCAGCUACGCCGa -3' miRNA: 3'- augAGGugGAa-------GGG-GUCGAUGUGGCg -5' |
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30918 | 5' | -56.5 | NC_006552.1 | + | 55949 | 0.66 | 0.652992 |
Target: 5'- aGCg-CACCUUCaaCCAGUUcCGCCGCu -3' miRNA: 3'- aUGagGUGGAAGg-GGUCGAuGUGGCG- -5' |
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30918 | 5' | -56.5 | NC_006552.1 | + | 52939 | 0.66 | 0.674697 |
Target: 5'- ---aCCGCCUgCgCCGGCgccCGCCGCc -3' miRNA: 3'- augaGGUGGAaGgGGUCGau-GUGGCG- -5' |
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30918 | 5' | -56.5 | NC_006552.1 | + | 52769 | 0.67 | 0.609434 |
Target: 5'- cGCUCC-CCacCCCCgAGCagauCGCCGCc -3' miRNA: 3'- aUGAGGuGGaaGGGG-UCGau--GUGGCG- -5' |
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30918 | 5' | -56.5 | NC_006552.1 | + | 52317 | 0.67 | 0.620318 |
Target: 5'- gACUagCCACCUcgCgCCGGCcACGCCGg -3' miRNA: 3'- aUGA--GGUGGAa-GgGGUCGaUGUGGCg -5' |
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30918 | 5' | -56.5 | NC_006552.1 | + | 49149 | 0.66 | 0.685495 |
Target: 5'- aGCaUCCucaGCCaaUCCCCuccGGCUGC-CCGCa -3' miRNA: 3'- aUG-AGG---UGGa-AGGGG---UCGAUGuGGCG- -5' |
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30918 | 5' | -56.5 | NC_006552.1 | + | 48928 | 0.67 | 0.59857 |
Target: 5'- --aUCCcccCCUUgCCCGGCUACgGCCGg -3' miRNA: 3'- augAGGu--GGAAgGGGUCGAUG-UGGCg -5' |
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30918 | 5' | -56.5 | NC_006552.1 | + | 42665 | 0.69 | 0.462616 |
Target: 5'- -uCUCgACCUUCgCCCAGC--CACCGg -3' miRNA: 3'- auGAGgUGGAAG-GGGUCGauGUGGCg -5' |
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30918 | 5' | -56.5 | NC_006552.1 | + | 31987 | 0.7 | 0.405437 |
Target: 5'- gUGCUCgGCgUgaaUCUCCGGCUGCGCgGUg -3' miRNA: 3'- -AUGAGgUGgA---AGGGGUCGAUGUGgCG- -5' |
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30918 | 5' | -56.5 | NC_006552.1 | + | 29810 | 0.67 | 0.620318 |
Target: 5'- gGCgggCCGCCa--CCCAGCgugACGuuGCg -3' miRNA: 3'- aUGa--GGUGGaagGGGUCGa--UGUggCG- -5' |
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30918 | 5' | -56.5 | NC_006552.1 | + | 26060 | 0.67 | 0.609434 |
Target: 5'- ---gCCGCCaUCCaCCGGCUGCACgaagguuaugCGCu -3' miRNA: 3'- augaGGUGGaAGG-GGUCGAUGUG----------GCG- -5' |
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30918 | 5' | -56.5 | NC_006552.1 | + | 24549 | 0.66 | 0.642106 |
Target: 5'- ---aCCACCUgcaugaCUUCAGCcaugGCACCGCu -3' miRNA: 3'- augaGGUGGAa-----GGGGUCGa---UGUGGCG- -5' |
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30918 | 5' | -56.5 | NC_006552.1 | + | 21644 | 0.68 | 0.566178 |
Target: 5'- gAUUCUGCCggCCaCCGGCUGgcuguCACCGUc -3' miRNA: 3'- aUGAGGUGGaaGG-GGUCGAU-----GUGGCG- -5' |
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30918 | 5' | -56.5 | NC_006552.1 | + | 19485 | 0.66 | 0.696243 |
Target: 5'- cGCUCUugCUUUCCgAacuGCUcGCGCUGCc -3' miRNA: 3'- aUGAGGugGAAGGGgU---CGA-UGUGGCG- -5' |
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30918 | 5' | -56.5 | NC_006552.1 | + | 16776 | 0.68 | 0.523754 |
Target: 5'- cACcgCC-CCUUCgCCAGCcGCGCCGg -3' miRNA: 3'- aUGa-GGuGGAAGgGGUCGaUGUGGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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