Results 21 - 39 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30922 | 5' | -54.1 | NC_006552.1 | + | 22371 | 0.74 | 0.396624 |
Target: 5'- uGUGCaGCA-CCAGCAgccCGUACAGCACc -3' miRNA: 3'- -CGCGcUGUaGGUCGU---GCAUGUCGUGc -5' |
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30922 | 5' | -54.1 | NC_006552.1 | + | 25221 | 0.66 | 0.828051 |
Target: 5'- aGCGCGGCG-CC-GUugACGUugAGCuGCGa -3' miRNA: 3'- -CGCGCUGUaGGuCG--UGCAugUCG-UGC- -5' |
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30922 | 5' | -54.1 | NC_006552.1 | + | 26393 | 0.69 | 0.654299 |
Target: 5'- -gGUGACuUCCAGCGCGc-CGGCAuCGg -3' miRNA: 3'- cgCGCUGuAGGUCGUGCauGUCGU-GC- -5' |
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30922 | 5' | -54.1 | NC_006552.1 | + | 26880 | 0.75 | 0.339805 |
Target: 5'- aGCGCGGCAUCUucGGCgACGUuguugaugccggccaGCGGCACc -3' miRNA: 3'- -CGCGCUGUAGG--UCG-UGCA---------------UGUCGUGc -5' |
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30922 | 5' | -54.1 | NC_006552.1 | + | 28225 | 0.67 | 0.780723 |
Target: 5'- uCGCGACcUCCGGCgucACGUuguggauGCGCGg -3' miRNA: 3'- cGCGCUGuAGGUCG---UGCAugu----CGUGC- -5' |
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30922 | 5' | -54.1 | NC_006552.1 | + | 31892 | 0.67 | 0.790535 |
Target: 5'- -aGCGGCuucggCCAGCGCGgcGCGGUuCGg -3' miRNA: 3'- cgCGCUGua---GGUCGUGCa-UGUCGuGC- -5' |
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30922 | 5' | -54.1 | NC_006552.1 | + | 32152 | 0.7 | 0.62151 |
Target: 5'- uGCGCGcCAuUCCGGCagcuccACGUcCAGCACc -3' miRNA: 3'- -CGCGCuGU-AGGUCG------UGCAuGUCGUGc -5' |
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30922 | 5' | -54.1 | NC_006552.1 | + | 33053 | 0.66 | 0.836066 |
Target: 5'- cUGCGAC-UCgGGCaacucgGCGUagggaacGCAGCACGg -3' miRNA: 3'- cGCGCUGuAGgUCG------UGCA-------UGUCGUGC- -5' |
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30922 | 5' | -54.1 | NC_006552.1 | + | 33358 | 0.72 | 0.503716 |
Target: 5'- uGCGUGACAgaagggCCAGCACGggcCGGCccuucguaggGCGg -3' miRNA: 3'- -CGCGCUGUa-----GGUCGUGCau-GUCG----------UGC- -5' |
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30922 | 5' | -54.1 | NC_006552.1 | + | 33739 | 0.67 | 0.750418 |
Target: 5'- uCGCcaACcgCCAGCGCGgcgGCGGCAUu -3' miRNA: 3'- cGCGc-UGuaGGUCGUGCa--UGUCGUGc -5' |
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30922 | 5' | -54.1 | NC_006552.1 | + | 37778 | 0.68 | 0.697685 |
Target: 5'- cGCGCucuGCAUCaCAGCGuCGgcgauCGGCGCGa -3' miRNA: 3'- -CGCGc--UGUAG-GUCGU-GCau---GUCGUGC- -5' |
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30922 | 5' | -54.1 | NC_006552.1 | + | 39274 | 0.68 | 0.740064 |
Target: 5'- -gGUGACAgCCAGCGCugcCGGCGCa -3' miRNA: 3'- cgCGCUGUaGGUCGUGcauGUCGUGc -5' |
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30922 | 5' | -54.1 | NC_006552.1 | + | 39352 | 0.68 | 0.719044 |
Target: 5'- uCGCGACGgauaggCCGGCA---GCGGUACGg -3' miRNA: 3'- cGCGCUGUa-----GGUCGUgcaUGUCGUGC- -5' |
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30922 | 5' | -54.1 | NC_006552.1 | + | 42165 | 0.66 | 0.818953 |
Target: 5'- aGCGCGcaGUCuUGGCGCuGUACuuGGCACGg -3' miRNA: 3'- -CGCGCugUAG-GUCGUG-CAUG--UCGUGC- -5' |
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30922 | 5' | -54.1 | NC_006552.1 | + | 43724 | 0.68 | 0.719044 |
Target: 5'- cGCcaaCGAC-UCCGGCACGa--GGCGCGa -3' miRNA: 3'- -CGc--GCUGuAGGUCGUGCaugUCGUGC- -5' |
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30922 | 5' | -54.1 | NC_006552.1 | + | 49184 | 0.71 | 0.556415 |
Target: 5'- uGCgGCGGCcugGUCCGGCugGU-CAGCAa- -3' miRNA: 3'- -CG-CGCUG---UAGGUCGugCAuGUCGUgc -5' |
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30922 | 5' | -54.1 | NC_006552.1 | + | 50083 | 0.75 | 0.3191 |
Target: 5'- aGCGCGACAaCC-GCACGcgggcggaacgcGCAGCACGg -3' miRNA: 3'- -CGCGCUGUaGGuCGUGCa-----------UGUCGUGC- -5' |
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30922 | 5' | -54.1 | NC_006552.1 | + | 52964 | 0.76 | 0.305329 |
Target: 5'- gGUGCGGCAUCCGgguGCGCGUucauCgAGCGCGc -3' miRNA: 3'- -CGCGCUGUAGGU---CGUGCAu---G-UCGUGC- -5' |
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30922 | 5' | -54.1 | NC_006552.1 | + | 62272 | 0.68 | 0.726444 |
Target: 5'- uGUGCGGCAUCgCAGUacucgcuccgucccGCGgacaccguCGGCGCGa -3' miRNA: 3'- -CGCGCUGUAG-GUCG--------------UGCau------GUCGUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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