miRNA display CGI


Results 21 - 39 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30922 5' -54.1 NC_006552.1 + 21862 0.7 0.588802
Target:  5'- cGCGCGcCgccagaugGUCCAGCAC---CAGCGCGg -3'
miRNA:   3'- -CGCGCuG--------UAGGUCGUGcauGUCGUGC- -5'
30922 5' -54.1 NC_006552.1 + 21161 0.67 0.770759
Target:  5'- aCGCGauaggcGCAUCCGGcCGCGUcggugcCGGCACa -3'
miRNA:   3'- cGCGC------UGUAGGUC-GUGCAu-----GUCGUGc -5'
30922 5' -54.1 NC_006552.1 + 20941 0.66 0.818953
Target:  5'- gGUGuCGAUGUCCGG-GCGUcCGGCACc -3'
miRNA:   3'- -CGC-GCUGUAGGUCgUGCAuGUCGUGc -5'
30922 5' -54.1 NC_006552.1 + 20888 0.7 0.62151
Target:  5'- aGCGCuuccAUGUCCGGCAUGgcgaucUGCGGCGCa -3'
miRNA:   3'- -CGCGc---UGUAGGUCGUGC------AUGUCGUGc -5'
30922 5' -54.1 NC_006552.1 + 20265 0.66 0.809661
Target:  5'- -aGCcGCAUCCAGcUugGUGCGGUAg- -3'
miRNA:   3'- cgCGcUGUAGGUC-GugCAUGUCGUgc -5'
30922 5' -54.1 NC_006552.1 + 19085 0.66 0.825342
Target:  5'- uGCGUGGCAUCCuucauugcauccagAGCcuucACGccaACGGCAUGa -3'
miRNA:   3'- -CGCGCUGUAGG--------------UCG----UGCa--UGUCGUGC- -5'
30922 5' -54.1 NC_006552.1 + 15747 0.68 0.686905
Target:  5'- aGC-CGGCAUCCGGCG-GU--GGCGCGa -3'
miRNA:   3'- -CGcGCUGUAGGUCGUgCAugUCGUGC- -5'
30922 5' -54.1 NC_006552.1 + 14119 0.71 0.556415
Target:  5'- cGCGCG-CAUCCGGCGcCGUcaugugAguGCGCu -3'
miRNA:   3'- -CGCGCuGUAGGUCGU-GCA------UguCGUGc -5'
30922 5' -54.1 NC_006552.1 + 13381 0.69 0.674989
Target:  5'- aCGCGGCGuuucgacUCCGGCACGcucaUGCcGCGCu -3'
miRNA:   3'- cGCGCUGU-------AGGUCGUGC----AUGuCGUGc -5'
30922 5' -54.1 NC_006552.1 + 12226 0.66 0.836946
Target:  5'- aGCGCGGgcggcCAUCC-GCGC--ACGGCGCu -3'
miRNA:   3'- -CGCGCU-----GUAGGuCGUGcaUGUCGUGc -5'
30922 5' -54.1 NC_006552.1 + 10790 0.68 0.708401
Target:  5'- gGCGcCGACggcauugcGUCCGGCGaacgaGUACuGCACa -3'
miRNA:   3'- -CGC-GCUG--------UAGGUCGUg----CAUGuCGUGc -5'
30922 5' -54.1 NC_006552.1 + 10206 0.67 0.770759
Target:  5'- gGCGCGAUAUCuCGGCgcaaACGUGgAGuCAUc -3'
miRNA:   3'- -CGCGCUGUAG-GUCG----UGCAUgUC-GUGc -5'
30922 5' -54.1 NC_006552.1 + 9707 0.67 0.780723
Target:  5'- aGCGCaugucGGCAUCCuugacgcuGGCGCGauucauCAGCAUGg -3'
miRNA:   3'- -CGCG-----CUGUAGG--------UCGUGCau----GUCGUGC- -5'
30922 5' -54.1 NC_006552.1 + 8245 0.67 0.749388
Target:  5'- gGCGCGGgccauggUGUCCAGgcUACGgucggugGCGGCGCGg -3'
miRNA:   3'- -CGCGCU-------GUAGGUC--GUGCa------UGUCGUGC- -5'
30922 5' -54.1 NC_006552.1 + 5619 0.8 0.172582
Target:  5'- aGCGCGGCAaCCAGCACGcgguUACGGCuguuCGa -3'
miRNA:   3'- -CGCGCUGUaGGUCGUGC----AUGUCGu---GC- -5'
30922 5' -54.1 NC_006552.1 + 2063 0.66 0.828051
Target:  5'- cGCGcCGGCGUCguGCGCGgcCuGCugauCGa -3'
miRNA:   3'- -CGC-GCUGUAGguCGUGCauGuCGu---GC- -5'
30922 5' -54.1 NC_006552.1 + 1709 0.69 0.643376
Target:  5'- cGCuGCGAUAcgUCAGCAC--GCAGCAUGg -3'
miRNA:   3'- -CG-CGCUGUa-GGUCGUGcaUGUCGUGC- -5'
30922 5' -54.1 NC_006552.1 + 738 0.71 0.545728
Target:  5'- cCGCGACGUgCAGCGCucccCGGCGCu -3'
miRNA:   3'- cGCGCUGUAgGUCGUGcau-GUCGUGc -5'
30922 5' -54.1 NC_006552.1 + 352 0.71 0.535109
Target:  5'- cCGCGACAg-CGGCACGauauacgGCGGCACc -3'
miRNA:   3'- cGCGCUGUagGUCGUGCa------UGUCGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.