miRNA display CGI


Results 61 - 80 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30923 3' -59.1 NC_006552.1 + 39141 0.68 0.450637
Target:  5'- uGCAuUG-UGCAGUCCGGUGGACGuGCCg -3'
miRNA:   3'- -CGUcGCgGCGUCGGGCCGCUUGU-UGG- -5'
30923 3' -59.1 NC_006552.1 + 10478 0.68 0.450637
Target:  5'- cGCAGUGCCGCcuUCUGGCaucACuGCCa -3'
miRNA:   3'- -CGUCGCGGCGucGGGCCGcu-UGuUGG- -5'
30923 3' -59.1 NC_006552.1 + 44513 0.68 0.446858
Target:  5'- cGCAGCaGCUcgGCGGCCCGcaucgcugcccaaCGAcaGCGACCa -3'
miRNA:   3'- -CGUCG-CGG--CGUCGGGCc------------GCU--UGUUGG- -5'
30923 3' -59.1 NC_006552.1 + 51993 0.68 0.441223
Target:  5'- aGCAGCGagaGCuuGCCgCGGCGcgccAGCAACUc -3'
miRNA:   3'- -CGUCGCgg-CGu-CGG-GCCGC----UUGUUGG- -5'
30923 3' -59.1 NC_006552.1 + 25223 0.68 0.441223
Target:  5'- cGCGGCGCCGUugacguugAGCUgcgacgcugUGGCGAugGuuacggucGCCa -3'
miRNA:   3'- -CGUCGCGGCG--------UCGG---------GCCGCUugU--------UGG- -5'
30923 3' -59.1 NC_006552.1 + 33226 0.68 0.441223
Target:  5'- uGCcGCGCUGCaugucuuccgGGCaCuCGGCGAACGguggcGCCa -3'
miRNA:   3'- -CGuCGCGGCG----------UCG-G-GCCGCUUGU-----UGG- -5'
30923 3' -59.1 NC_006552.1 + 57865 0.68 0.441223
Target:  5'- gGCAGUGUgGCGGCaCCaGgGAACAcguuCCa -3'
miRNA:   3'- -CGUCGCGgCGUCG-GGcCgCUUGUu---GG- -5'
30923 3' -59.1 NC_006552.1 + 55311 0.68 0.431921
Target:  5'- uCAGCGgC-UGGCUCGGCGAguaccuggaagGCGACCg -3'
miRNA:   3'- cGUCGCgGcGUCGGGCCGCU-----------UGUUGG- -5'
30923 3' -59.1 NC_006552.1 + 6429 0.68 0.422735
Target:  5'- cGCAuuucGCaCCGC-GCCCGGCGA-CAucuCCa -3'
miRNA:   3'- -CGU----CGcGGCGuCGGGCCGCUuGUu--GG- -5'
30923 3' -59.1 NC_006552.1 + 63608 0.68 0.422735
Target:  5'- cCAGC-CCGCAGCgCUGGUuGACgGACCu -3'
miRNA:   3'- cGUCGcGGCGUCG-GGCCGcUUG-UUGG- -5'
30923 3' -59.1 NC_006552.1 + 48304 0.68 0.422735
Target:  5'- -aAGCGaaaCGCcaaCCCGGCG-GCGACCg -3'
miRNA:   3'- cgUCGCg--GCGuc-GGGCCGCuUGUUGG- -5'
30923 3' -59.1 NC_006552.1 + 40456 0.68 0.422735
Target:  5'- cGCAGCGUCGCcauGUCCuuGGCGu---ACCa -3'
miRNA:   3'- -CGUCGCGGCGu--CGGG--CCGCuuguUGG- -5'
30923 3' -59.1 NC_006552.1 + 63494 0.68 0.422735
Target:  5'- cCGGCGCCGgAGCaaCCGGa-GACAccGCCa -3'
miRNA:   3'- cGUCGCGGCgUCG--GGCCgcUUGU--UGG- -5'
30923 3' -59.1 NC_006552.1 + 38852 0.69 0.413667
Target:  5'- -aAGUGCCGguGCguguaCGGCGuGgGACCa -3'
miRNA:   3'- cgUCGCGGCguCGg----GCCGCuUgUUGG- -5'
30923 3' -59.1 NC_006552.1 + 17888 0.69 0.413667
Target:  5'- -aGGCuGCauucaagGCGGCCUGGCGAACGcuaucgGCCc -3'
miRNA:   3'- cgUCG-CGg------CGUCGGGCCGCUUGU------UGG- -5'
30923 3' -59.1 NC_006552.1 + 7218 0.69 0.408284
Target:  5'- cGCAGCgaGCCGCuGCCgCGGgccugcgccaucaacUGGugGACCu -3'
miRNA:   3'- -CGUCG--CGGCGuCGG-GCC---------------GCUugUUGG- -5'
30923 3' -59.1 NC_006552.1 + 54139 0.69 0.395896
Target:  5'- -gAGCGCCGgGccGCCCGGa-GACAGCa -3'
miRNA:   3'- cgUCGCGGCgU--CGGGCCgcUUGUUGg -5'
30923 3' -59.1 NC_006552.1 + 26532 0.69 0.386334
Target:  5'- gGCGGCGCCggGguGUCCagcgucaGGCGcuCGGCCu -3'
miRNA:   3'- -CGUCGCGG--CguCGGG-------CCGCuuGUUGG- -5'
30923 3' -59.1 NC_006552.1 + 26443 0.69 0.378625
Target:  5'- aCGGCGCCGacuCCUGGgGGccgcGCAGCCa -3'
miRNA:   3'- cGUCGCGGCgucGGGCCgCU----UGUUGG- -5'
30923 3' -59.1 NC_006552.1 + 59807 0.69 0.378625
Target:  5'- uGCAGa-CCGcCAGCaaGGUGAugGACCu -3'
miRNA:   3'- -CGUCgcGGC-GUCGggCCGCUugUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.