miRNA display CGI


Results 41 - 60 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30923 3' -59.1 NC_006552.1 + 59400 0.67 0.48935
Target:  5'- -gGGCGCgGCAGCgucaGGCGGugGCGGCg -3'
miRNA:   3'- cgUCGCGgCGUCGgg--CCGCU--UGUUGg -5'
30923 3' -59.1 NC_006552.1 + 31846 0.67 0.48935
Target:  5'- --uGCGCCGCAGgUCGGagucgGGGCGcucGCCg -3'
miRNA:   3'- cguCGCGGCGUCgGGCCg----CUUGU---UGG- -5'
30923 3' -59.1 NC_006552.1 + 35423 0.67 0.48935
Target:  5'- gGCAGCcuggGCCGCAGCCUucgcgucuuGcGCGuuCGGCUg -3'
miRNA:   3'- -CGUCG----CGGCGUCGGG---------C-CGCuuGUUGG- -5'
30923 3' -59.1 NC_006552.1 + 11475 0.67 0.48935
Target:  5'- cGCAGUGCagaGCGGUacucgcugCCGGUGAGgAugCc -3'
miRNA:   3'- -CGUCGCGg--CGUCG--------GGCCGCUUgUugG- -5'
30923 3' -59.1 NC_006552.1 + 41413 0.67 0.479521
Target:  5'- gGCAGCGCgC-CAGUUCGGCcgcguccgugggGAGCGGCa -3'
miRNA:   3'- -CGUCGCG-GcGUCGGGCCG------------CUUGUUGg -5'
30923 3' -59.1 NC_006552.1 + 4839 0.67 0.479521
Target:  5'- gGCGGuCG-CGCAGCUCaccagcaaGGCGAGCGAUUu -3'
miRNA:   3'- -CGUC-GCgGCGUCGGG--------CCGCUUGUUGG- -5'
30923 3' -59.1 NC_006552.1 + 4417 0.67 0.479521
Target:  5'- aCAGgGCCGguGCcaccaccauCCGGCGuGCccuuGACCa -3'
miRNA:   3'- cGUCgCGGCguCG---------GGCCGCuUG----UUGG- -5'
30923 3' -59.1 NC_006552.1 + 5253 0.67 0.478543
Target:  5'- aGCAGguCGUCGCAcGCcugccgguaguugCCGGCGAGCAAg- -3'
miRNA:   3'- -CGUC--GCGGCGU-CG-------------GGCCGCUUGUUgg -5'
30923 3' -59.1 NC_006552.1 + 59609 0.68 0.46979
Target:  5'- -aAGCGCagGCcGCCUGGCaGAACucggGCCg -3'
miRNA:   3'- cgUCGCGg-CGuCGGGCCG-CUUGu---UGG- -5'
30923 3' -59.1 NC_006552.1 + 7021 0.68 0.46979
Target:  5'- --cGCGCa-CGGCCCGGCGuGCGAa- -3'
miRNA:   3'- cguCGCGgcGUCGGGCCGCuUGUUgg -5'
30923 3' -59.1 NC_006552.1 + 26869 0.68 0.46979
Target:  5'- cGCcGCGuuGCAGCgCGGCaucuucGGCGACg -3'
miRNA:   3'- -CGuCGCggCGUCGgGCCGc-----UUGUUGg -5'
30923 3' -59.1 NC_006552.1 + 27632 0.68 0.46979
Target:  5'- uGC-GCGCCG-AGCcgaaucgcucacCCGGCGGAUAAaCCa -3'
miRNA:   3'- -CGuCGCGGCgUCG------------GGCCGCUUGUU-GG- -5'
30923 3' -59.1 NC_006552.1 + 28108 0.68 0.460161
Target:  5'- uGCGGuCGgCGaucuuuGCCUGGCcGAACAACUg -3'
miRNA:   3'- -CGUC-GCgGCgu----CGGGCCG-CUUGUUGG- -5'
30923 3' -59.1 NC_006552.1 + 4783 0.68 0.460161
Target:  5'- uGCGGCGCCaccacuaCAGCCCccaccugcGGCGGggGCGAUg -3'
miRNA:   3'- -CGUCGCGGc------GUCGGG--------CCGCU--UGUUGg -5'
30923 3' -59.1 NC_006552.1 + 12836 0.68 0.460161
Target:  5'- aCAGCcuucuGCUGCGcuGCCCGGCGGGCcuggauuuCCu -3'
miRNA:   3'- cGUCG-----CGGCGU--CGGGCCGCUUGuu------GG- -5'
30923 3' -59.1 NC_006552.1 + 64147 0.68 0.460161
Target:  5'- cGCAgcucGCGCCGC--CCUGGCGcACGcGCCg -3'
miRNA:   3'- -CGU----CGCGGCGucGGGCCGCuUGU-UGG- -5'
30923 3' -59.1 NC_006552.1 + 39141 0.68 0.450637
Target:  5'- uGCAuUG-UGCAGUCCGGUGGACGuGCCg -3'
miRNA:   3'- -CGUcGCgGCGUCGGGCCGCUUGU-UGG- -5'
30923 3' -59.1 NC_006552.1 + 41978 0.68 0.450637
Target:  5'- -aAGcCGUgGCAGUaCCGGC-AGCAACCg -3'
miRNA:   3'- cgUC-GCGgCGUCG-GGCCGcUUGUUGG- -5'
30923 3' -59.1 NC_006552.1 + 63817 0.68 0.450637
Target:  5'- uCGGCGCCcaggcCAGCcagccgCCGGCGGAgGAUCa -3'
miRNA:   3'- cGUCGCGGc----GUCG------GGCCGCUUgUUGG- -5'
30923 3' -59.1 NC_006552.1 + 23836 0.68 0.450637
Target:  5'- cGC-GCGCCGC----CGGCGGACAACg -3'
miRNA:   3'- -CGuCGCGGCGucggGCCGCUUGUUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.