miRNA display CGI


Results 21 - 40 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30923 3' -59.1 NC_006552.1 + 3146 0.66 0.550101
Target:  5'- aGCGGCGaCGCcugAGCCgaCGGCGAucCAuCCa -3'
miRNA:   3'- -CGUCGCgGCG---UCGG--GCCGCUu-GUuGG- -5'
30923 3' -59.1 NC_006552.1 + 53589 0.66 0.550101
Target:  5'- uGUGGCGCCGgcCAGUUCGGU--GCcGCCg -3'
miRNA:   3'- -CGUCGCGGC--GUCGGGCCGcuUGuUGG- -5'
30923 3' -59.1 NC_006552.1 + 20161 0.66 0.550101
Target:  5'- aCGGCGUC-CAGCuuGGCcuuGAAC-ACCu -3'
miRNA:   3'- cGUCGCGGcGUCGggCCG---CUUGuUGG- -5'
30923 3' -59.1 NC_006552.1 + 57316 0.66 0.550101
Target:  5'- cGC-GCGCaGUGGCCUGGC--GCAGCUc -3'
miRNA:   3'- -CGuCGCGgCGUCGGGCCGcuUGUUGG- -5'
30923 3' -59.1 NC_006552.1 + 30902 0.66 0.53979
Target:  5'- uGCuGCugGCaGCGGUCgGGCGGACAuggaGCCu -3'
miRNA:   3'- -CGuCG--CGgCGUCGGgCCGCUUGU----UGG- -5'
30923 3' -59.1 NC_006552.1 + 5590 0.67 0.529547
Target:  5'- -aAGCGCCGaagcCGGCCaGGCuGAcggucagcgcgGCAACCa -3'
miRNA:   3'- cgUCGCGGC----GUCGGgCCG-CU-----------UGUUGG- -5'
30923 3' -59.1 NC_006552.1 + 8153 0.67 0.529547
Target:  5'- cGCAGUaUCGCGGCCCccuccuGCGcauCGGCCg -3'
miRNA:   3'- -CGUCGcGGCGUCGGGc-----CGCuu-GUUGG- -5'
30923 3' -59.1 NC_006552.1 + 6637 0.67 0.529547
Target:  5'- aGCGGaGCCccagGCAGCCCGGacaccccGCGAUCa -3'
miRNA:   3'- -CGUCgCGG----CGUCGGGCCgcu----UGUUGG- -5'
30923 3' -59.1 NC_006552.1 + 33549 0.67 0.529547
Target:  5'- cGCAGCgGCCGaCAGCagcaGGCcAGC-GCCg -3'
miRNA:   3'- -CGUCG-CGGC-GUCGgg--CCGcUUGuUGG- -5'
30923 3' -59.1 NC_006552.1 + 21915 0.67 0.529547
Target:  5'- aGCAGCGCCuGCacGGCCUGaugcGCGucCAccACCu -3'
miRNA:   3'- -CGUCGCGG-CG--UCGGGC----CGCuuGU--UGG- -5'
30923 3' -59.1 NC_006552.1 + 35128 0.67 0.528526
Target:  5'- gGCGGUucagggucgaGuuGCGGCCCuGGCaGAGCGcgaacaaGCCg -3'
miRNA:   3'- -CGUCG----------CggCGUCGGG-CCG-CUUGU-------UGG- -5'
30923 3' -59.1 NC_006552.1 + 57680 0.67 0.519375
Target:  5'- aCAGCcaaGCAG-CCGGCGGcCAACCu -3'
miRNA:   3'- cGUCGcggCGUCgGGCCGCUuGUUGG- -5'
30923 3' -59.1 NC_006552.1 + 48425 0.67 0.519375
Target:  5'- -aAGC-CCaGguGCUCGGCGGACAcACUg -3'
miRNA:   3'- cgUCGcGG-CguCGGGCCGCUUGU-UGG- -5'
30923 3' -59.1 NC_006552.1 + 24737 0.67 0.519375
Target:  5'- cCGGCGCCG-GGCCUGcuCGGuCAACCu -3'
miRNA:   3'- cGUCGCGGCgUCGGGCc-GCUuGUUGG- -5'
30923 3' -59.1 NC_006552.1 + 16363 0.67 0.519375
Target:  5'- uGCAGaacCGCCGcCGGCCCG-CccAUAGCCa -3'
miRNA:   3'- -CGUC---GCGGC-GUCGGGCcGcuUGUUGG- -5'
30923 3' -59.1 NC_006552.1 + 32028 0.67 0.519375
Target:  5'- cCAGCGCCauguCAGCCaggGGCGuGCGguaGCCc -3'
miRNA:   3'- cGUCGCGGc---GUCGGg--CCGCuUGU---UGG- -5'
30923 3' -59.1 NC_006552.1 + 63138 0.67 0.509282
Target:  5'- cGCGGCGaacacccgcacaCCGCGGagcaGGCGAACcuGCCg -3'
miRNA:   3'- -CGUCGC------------GGCGUCggg-CCGCUUGu-UGG- -5'
30923 3' -59.1 NC_006552.1 + 12998 0.67 0.505267
Target:  5'- cGUAGCugcucgggccguaGCUGCGGCCCaGCGcAaauuccuccaacacGCGACCg -3'
miRNA:   3'- -CGUCG-------------CGGCGUCGGGcCGC-U--------------UGUUGG- -5'
30923 3' -59.1 NC_006552.1 + 3577 0.67 0.499272
Target:  5'- uGCuGGCcgaGCCGcCGGCgCCGGCaGGACuuGCCg -3'
miRNA:   3'- -CG-UCG---CGGC-GUCG-GGCCG-CUUGu-UGG- -5'
30923 3' -59.1 NC_006552.1 + 48998 0.67 0.499272
Target:  5'- ---cCGCCGggcaAGCCCGGCGGcgcgagcguuCAGCCg -3'
miRNA:   3'- cgucGCGGCg---UCGGGCCGCUu---------GUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.