Results 21 - 40 of 117 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30923 | 3' | -59.1 | NC_006552.1 | + | 38265 | 0.71 | 0.286003 |
Target: 5'- --cGCGCUGCGGCUCGuuGAGC-ACCa -3' miRNA: 3'- cguCGCGGCGUCGGGCcgCUUGuUGG- -5' |
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30923 | 3' | -59.1 | NC_006552.1 | + | 25412 | 0.71 | 0.286003 |
Target: 5'- aGCAgGUGCUGCcGuCCCaGCGAACAggGCCa -3' miRNA: 3'- -CGU-CGCGGCGuC-GGGcCGCUUGU--UGG- -5' |
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30923 | 3' | -59.1 | NC_006552.1 | + | 28686 | 0.74 | 0.201617 |
Target: 5'- gGCGGCGCCacGCcGCCUGGCaaGAuCGGCCu -3' miRNA: 3'- -CGUCGCGG--CGuCGGGCCG--CUuGUUGG- -5' |
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30923 | 3' | -59.1 | NC_006552.1 | + | 10789 | 0.74 | 0.195996 |
Target: 5'- -uGGCGCCGaCGGCauugcguCCGGCGAACGAgUa -3' miRNA: 3'- cgUCGCGGC-GUCG-------GGCCGCUUGUUgG- -5' |
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30923 | 3' | -59.1 | NC_006552.1 | + | 10695 | 0.74 | 0.177158 |
Target: 5'- uCAGUGCCGCGGUgccagCCGGUaucucgacGAACGGCCu -3' miRNA: 3'- cGUCGCGGCGUCG-----GGCCG--------CUUGUUGG- -5' |
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30923 | 3' | -59.1 | NC_006552.1 | + | 15350 | 0.75 | 0.168136 |
Target: 5'- uGCAGCGCCGCAGgCUGcuCGAGCuuCUg -3' miRNA: 3'- -CGUCGCGGCGUCgGGCc-GCUUGuuGG- -5' |
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30923 | 3' | -59.1 | NC_006552.1 | + | 50512 | 0.75 | 0.151318 |
Target: 5'- aCGGCGCCgGCAGCCgucaaGCGAGCAACa -3' miRNA: 3'- cGUCGCGG-CGUCGGgc---CGCUUGUUGg -5' |
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30923 | 3' | -59.1 | NC_006552.1 | + | 44796 | 0.76 | 0.145029 |
Target: 5'- aCAGCGgcaaccgugaaucguCCGCccuCCCGGCGAACGGCCu -3' miRNA: 3'- cGUCGC---------------GGCGuc-GGGCCGCUUGUUGG- -5' |
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30923 | 3' | -59.1 | NC_006552.1 | + | 44376 | 0.77 | 0.120235 |
Target: 5'- aGCAGCcggucggaggguccaGUCaGCAGCCCGGCGAuuGCGcuGCCg -3' miRNA: 3'- -CGUCG---------------CGG-CGUCGGGCCGCU--UGU--UGG- -5' |
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30923 | 3' | -59.1 | NC_006552.1 | + | 44565 | 0.77 | 0.118944 |
Target: 5'- gGCAGCGCCuGCuGCCUGGCacgaguGAGCAGgCg -3' miRNA: 3'- -CGUCGCGG-CGuCGGGCCG------CUUGUUgG- -5' |
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30923 | 3' | -59.1 | NC_006552.1 | + | 53304 | 0.74 | 0.203695 |
Target: 5'- cGCAGC-CCGCcGCgCGGCGcacaacaucagcuucGACGACCg -3' miRNA: 3'- -CGUCGcGGCGuCGgGCCGC---------------UUGUUGG- -5' |
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30923 | 3' | -59.1 | NC_006552.1 | + | 5685 | 0.73 | 0.211117 |
Target: 5'- gGCAGCGCUcucggcugauucgcgGCGGUCgCGGCGAACcuggaaauagauauuGGCCa -3' miRNA: 3'- -CGUCGCGG---------------CGUCGG-GCCGCUUG---------------UUGG- -5' |
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30923 | 3' | -59.1 | NC_006552.1 | + | 11333 | 0.72 | 0.272423 |
Target: 5'- gGCGGCGUCGaUGGCUuccuCGGUGAcgGCGGCCg -3' miRNA: 3'- -CGUCGCGGC-GUCGG----GCCGCU--UGUUGG- -5' |
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30923 | 3' | -59.1 | NC_006552.1 | + | 41123 | 0.72 | 0.26583 |
Target: 5'- aGCcGCGUCGCGGuCCUGcGCGAugAuGCCg -3' miRNA: 3'- -CGuCGCGGCGUC-GGGC-CGCUugU-UGG- -5' |
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30923 | 3' | -59.1 | NC_006552.1 | + | 15572 | 0.72 | 0.253031 |
Target: 5'- uGCuGCGCCGCcuGGUCCagGGCGAA--GCCg -3' miRNA: 3'- -CGuCGCGGCG--UCGGG--CCGCUUguUGG- -5' |
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30923 | 3' | -59.1 | NC_006552.1 | + | 62758 | 0.72 | 0.253031 |
Target: 5'- -gGGCGCUGCcGCgCCuGCGAGCGACg -3' miRNA: 3'- cgUCGCGGCGuCG-GGcCGCUUGUUGg -5' |
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30923 | 3' | -59.1 | NC_006552.1 | + | 31903 | 0.72 | 0.246824 |
Target: 5'- cCAGCGCggCGCGGUUCGGauCGAACGACUc -3' miRNA: 3'- cGUCGCG--GCGUCGGGCC--GCUUGUUGG- -5' |
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30923 | 3' | -59.1 | NC_006552.1 | + | 48388 | 0.72 | 0.240743 |
Target: 5'- cGCGGCGCaacgccgaaaCGCA-CCCGGaCG-ACAACCg -3' miRNA: 3'- -CGUCGCG----------GCGUcGGGCC-GCuUGUUGG- -5' |
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30923 | 3' | -59.1 | NC_006552.1 | + | 17536 | 0.72 | 0.240743 |
Target: 5'- uCGGCGaUCGCGGCgCGGUcuucggGAGCAGCCu -3' miRNA: 3'- cGUCGC-GGCGUCGgGCCG------CUUGUUGG- -5' |
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30923 | 3' | -59.1 | NC_006552.1 | + | 63246 | 0.73 | 0.223249 |
Target: 5'- gGCuGUGCCuaucgccucgGCAcCCCGGCGAACAccucGCCg -3' miRNA: 3'- -CGuCGCGG----------CGUcGGGCCGCUUGU----UGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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