Results 21 - 40 of 117 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30923 | 3' | -59.1 | NC_006552.1 | + | 10624 | 0.66 | 0.56047 |
Target: 5'- -uGGCGCCaGCagucucaccGGCCaCGGCGAuGCuGGCCu -3' miRNA: 3'- cgUCGCGG-CG---------UCGG-GCCGCU-UG-UUGG- -5' |
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30923 | 3' | -59.1 | NC_006552.1 | + | 10695 | 0.74 | 0.177158 |
Target: 5'- uCAGUGCCGCGGUgccagCCGGUaucucgacGAACGGCCu -3' miRNA: 3'- cGUCGCGGCGUCG-----GGCCG--------CUUGUUGG- -5' |
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30923 | 3' | -59.1 | NC_006552.1 | + | 10789 | 0.74 | 0.195996 |
Target: 5'- -uGGCGCCGaCGGCauugcguCCGGCGAACGAgUa -3' miRNA: 3'- cgUCGCGGC-GUCG-------GGCCGCUUGUUgG- -5' |
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30923 | 3' | -59.1 | NC_006552.1 | + | 11333 | 0.72 | 0.272423 |
Target: 5'- gGCGGCGUCGaUGGCUuccuCGGUGAcgGCGGCCg -3' miRNA: 3'- -CGUCGCGGC-GUCGG----GCCGCU--UGUUGG- -5' |
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30923 | 3' | -59.1 | NC_006552.1 | + | 11475 | 0.67 | 0.48935 |
Target: 5'- cGCAGUGCagaGCGGUacucgcugCCGGUGAGgAugCc -3' miRNA: 3'- -CGUCGCGg--CGUCG--------GGCCGCUUgUugG- -5' |
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30923 | 3' | -59.1 | NC_006552.1 | + | 12363 | 0.66 | 0.581362 |
Target: 5'- -aGGCGUCGCGGCgCGcuucuGC-AACGGCCu -3' miRNA: 3'- cgUCGCGGCGUCGgGC-----CGcUUGUUGG- -5' |
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30923 | 3' | -59.1 | NC_006552.1 | + | 12836 | 0.68 | 0.460161 |
Target: 5'- aCAGCcuucuGCUGCGcuGCCCGGCGGGCcuggauuuCCu -3' miRNA: 3'- cGUCG-----CGGCGU--CGGGCCGCUUGuu------GG- -5' |
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30923 | 3' | -59.1 | NC_006552.1 | + | 12945 | 0.7 | 0.320002 |
Target: 5'- cCAGCGCgcugGCcuuGGCCUGGCGGugcguucgaggccaGCAGCCg -3' miRNA: 3'- cGUCGCGg---CG---UCGGGCCGCU--------------UGUUGG- -5' |
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30923 | 3' | -59.1 | NC_006552.1 | + | 12998 | 0.67 | 0.505267 |
Target: 5'- cGUAGCugcucgggccguaGCUGCGGCCCaGCGcAaauuccuccaacacGCGACCg -3' miRNA: 3'- -CGUCG-------------CGGCGUCGGGcCGC-U--------------UGUUGG- -5' |
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30923 | 3' | -59.1 | NC_006552.1 | + | 13632 | 0.71 | 0.292991 |
Target: 5'- gGCAcGgGCCugcucgGCGGCCUGGCGAucuGCCg -3' miRNA: 3'- -CGU-CgCGG------CGUCGGGCCGCUuguUGG- -5' |
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30923 | 3' | -59.1 | NC_006552.1 | + | 14735 | 0.66 | 0.581362 |
Target: 5'- --cGCGCCGCGguGCUCGGCcuuGAucuGCGGCa -3' miRNA: 3'- cguCGCGGCGU--CGGGCCG---CU---UGUUGg -5' |
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30923 | 3' | -59.1 | NC_006552.1 | + | 15350 | 0.75 | 0.168136 |
Target: 5'- uGCAGCGCCGCAGgCUGcuCGAGCuuCUg -3' miRNA: 3'- -CGUCGCGGCGUCgGGCc-GCUUGuuGG- -5' |
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30923 | 3' | -59.1 | NC_006552.1 | + | 15572 | 0.72 | 0.253031 |
Target: 5'- uGCuGCGCCGCcuGGUCCagGGCGAA--GCCg -3' miRNA: 3'- -CGuCGCGGCG--UCGGG--CCGCUUguUGG- -5' |
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30923 | 3' | -59.1 | NC_006552.1 | + | 15642 | 0.66 | 0.56047 |
Target: 5'- gGUGGCGCUGCucauccugcuGGuCCuCGGCGAggaucGCAGCa -3' miRNA: 3'- -CGUCGCGGCG----------UC-GG-GCCGCU-----UGUUGg -5' |
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30923 | 3' | -59.1 | NC_006552.1 | + | 16363 | 0.67 | 0.519375 |
Target: 5'- uGCAGaacCGCCGcCGGCCCG-CccAUAGCCa -3' miRNA: 3'- -CGUC---GCGGC-GUCGGGCcGcuUGUUGG- -5' |
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30923 | 3' | -59.1 | NC_006552.1 | + | 17536 | 0.72 | 0.240743 |
Target: 5'- uCGGCGaUCGCGGCgCGGUcuucggGAGCAGCCu -3' miRNA: 3'- cGUCGC-GGCGUCGgGCCG------CUUGUUGG- -5' |
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30923 | 3' | -59.1 | NC_006552.1 | + | 17888 | 0.69 | 0.413667 |
Target: 5'- -aGGCuGCauucaagGCGGCCUGGCGAACGcuaucgGCCc -3' miRNA: 3'- cgUCG-CGg------CGUCGGGCCGCUUGU------UGG- -5' |
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30923 | 3' | -59.1 | NC_006552.1 | + | 20161 | 0.66 | 0.550101 |
Target: 5'- aCGGCGUC-CAGCuuGGCcuuGAAC-ACCu -3' miRNA: 3'- cGUCGCGGcGUCGggCCG---CUUGuUGG- -5' |
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30923 | 3' | -59.1 | NC_006552.1 | + | 20536 | 0.66 | 0.578217 |
Target: 5'- cCGGCcuuGCuCGCGcaccacaucuaccuGCCUGGCGAGCAuCCc -3' miRNA: 3'- cGUCG---CG-GCGU--------------CGGGCCGCUUGUuGG- -5' |
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30923 | 3' | -59.1 | NC_006552.1 | + | 20655 | 0.66 | 0.581362 |
Target: 5'- --cGCGuUCGCgGGCaCgGGCGAACAGCg -3' miRNA: 3'- cguCGC-GGCG-UCG-GgCCGCUUGUUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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