miRNA display CGI


Results 21 - 40 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30923 3' -59.1 NC_006552.1 + 22404 0.66 0.559431
Target:  5'- cGCugauGCGCgCGguGCUucgcugaCGGCcGACAACCc -3'
miRNA:   3'- -CGu---CGCG-GCguCGG-------GCCGcUUGUUGG- -5'
30923 3' -59.1 NC_006552.1 + 53589 0.66 0.550101
Target:  5'- uGUGGCGCCGgcCAGUUCGGU--GCcGCCg -3'
miRNA:   3'- -CGUCGCGGC--GUCGGGCCGcuUGuUGG- -5'
30923 3' -59.1 NC_006552.1 + 58618 0.66 0.580314
Target:  5'- uCGGUgGCCGC-GCCgGGCaGAcugaaccGCGACCg -3'
miRNA:   3'- cGUCG-CGGCGuCGGgCCG-CU-------UGUUGG- -5'
30923 3' -59.1 NC_006552.1 + 57316 0.66 0.550101
Target:  5'- cGC-GCGCaGUGGCCUGGC--GCAGCUc -3'
miRNA:   3'- -CGuCGCGgCGUCGGGCCGcuUGUUGG- -5'
30923 3' -59.1 NC_006552.1 + 61193 0.66 0.56047
Target:  5'- aGCcuGCGCCGauauCGGCUgcuggGGCGAcACAGCCa -3'
miRNA:   3'- -CGu-CGCGGC----GUCGGg----CCGCU-UGUUGG- -5'
30923 3' -59.1 NC_006552.1 + 4417 0.67 0.479521
Target:  5'- aCAGgGCCGguGCcaccaccauCCGGCGuGCccuuGACCa -3'
miRNA:   3'- cGUCgCGGCguCG---------GGCCGCuUG----UUGG- -5'
30923 3' -59.1 NC_006552.1 + 4839 0.67 0.479521
Target:  5'- gGCGGuCG-CGCAGCUCaccagcaaGGCGAGCGAUUu -3'
miRNA:   3'- -CGUC-GCgGCGUCGGG--------CCGCUUGUUGG- -5'
30923 3' -59.1 NC_006552.1 + 3577 0.67 0.499272
Target:  5'- uGCuGGCcgaGCCGcCGGCgCCGGCaGGACuuGCCg -3'
miRNA:   3'- -CG-UCG---CGGC-GUCG-GGCCG-CUUGu-UGG- -5'
30923 3' -59.1 NC_006552.1 + 12998 0.67 0.505267
Target:  5'- cGUAGCugcucgggccguaGCUGCGGCCCaGCGcAaauuccuccaacacGCGACCg -3'
miRNA:   3'- -CGUCG-------------CGGCGUCGGGcCGC-U--------------UGUUGG- -5'
30923 3' -59.1 NC_006552.1 + 16363 0.67 0.519375
Target:  5'- uGCAGaacCGCCGcCGGCCCG-CccAUAGCCa -3'
miRNA:   3'- -CGUC---GCGGC-GUCGGGCcGcuUGUUGG- -5'
30923 3' -59.1 NC_006552.1 + 63138 0.67 0.509282
Target:  5'- cGCGGCGaacacccgcacaCCGCGGagcaGGCGAACcuGCCg -3'
miRNA:   3'- -CGUCGC------------GGCGUCggg-CCGCUUGu-UGG- -5'
30923 3' -59.1 NC_006552.1 + 32028 0.67 0.519375
Target:  5'- cCAGCGCCauguCAGCCaggGGCGuGCGguaGCCc -3'
miRNA:   3'- cGUCGCGGc---GUCGGg--CCGCuUGU---UGG- -5'
30923 3' -59.1 NC_006552.1 + 59400 0.67 0.48935
Target:  5'- -gGGCGCgGCAGCgucaGGCGGugGCGGCg -3'
miRNA:   3'- cgUCGCGgCGUCGgg--CCGCU--UGUUGg -5'
30923 3' -59.1 NC_006552.1 + 35423 0.67 0.48935
Target:  5'- gGCAGCcuggGCCGCAGCCUucgcgucuuGcGCGuuCGGCUg -3'
miRNA:   3'- -CGUCG----CGGCGUCGGG---------C-CGCuuGUUGG- -5'
30923 3' -59.1 NC_006552.1 + 31846 0.67 0.48935
Target:  5'- --uGCGCCGCAGgUCGGagucgGGGCGcucGCCg -3'
miRNA:   3'- cguCGCGGCGUCgGGCCg----CUUGU---UGG- -5'
30923 3' -59.1 NC_006552.1 + 41413 0.67 0.479521
Target:  5'- gGCAGCGCgC-CAGUUCGGCcgcguccgugggGAGCGGCa -3'
miRNA:   3'- -CGUCGCG-GcGUCGGGCCG------------CUUGUUGg -5'
30923 3' -59.1 NC_006552.1 + 8153 0.67 0.529547
Target:  5'- cGCAGUaUCGCGGCCCccuccuGCGcauCGGCCg -3'
miRNA:   3'- -CGUCGcGGCGUCGGGc-----CGCuu-GUUGG- -5'
30923 3' -59.1 NC_006552.1 + 21915 0.67 0.529547
Target:  5'- aGCAGCGCCuGCacGGCCUGaugcGCGucCAccACCu -3'
miRNA:   3'- -CGUCGCGG-CG--UCGGGC----CGCuuGU--UGG- -5'
30923 3' -59.1 NC_006552.1 + 5590 0.67 0.529547
Target:  5'- -aAGCGCCGaagcCGGCCaGGCuGAcggucagcgcgGCAACCa -3'
miRNA:   3'- cgUCGCGGC----GUCGGgCCG-CU-----------UGUUGG- -5'
30923 3' -59.1 NC_006552.1 + 48425 0.67 0.519375
Target:  5'- -aAGC-CCaGguGCUCGGCGGACAcACUg -3'
miRNA:   3'- cgUCGcGG-CguCGGGCCGCUUGU-UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.