miRNA display CGI


Results 21 - 40 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30923 3' -59.1 NC_006552.1 + 38265 0.71 0.286003
Target:  5'- --cGCGCUGCGGCUCGuuGAGC-ACCa -3'
miRNA:   3'- cguCGCGGCGUCGGGCcgCUUGuUGG- -5'
30923 3' -59.1 NC_006552.1 + 25412 0.71 0.286003
Target:  5'- aGCAgGUGCUGCcGuCCCaGCGAACAggGCCa -3'
miRNA:   3'- -CGU-CGCGGCGuC-GGGcCGCUUGU--UGG- -5'
30923 3' -59.1 NC_006552.1 + 13632 0.71 0.292991
Target:  5'- gGCAcGgGCCugcucgGCGGCCUGGCGAucuGCCg -3'
miRNA:   3'- -CGU-CgCGG------CGUCGGGCCGCUuguUGG- -5'
30923 3' -59.1 NC_006552.1 + 746 0.71 0.300111
Target:  5'- uGCAGCGCUc---CCCGGCGcucgauggcuccGACAACCg -3'
miRNA:   3'- -CGUCGCGGcgucGGGCCGC------------UUGUUGG- -5'
30923 3' -59.1 NC_006552.1 + 25798 0.71 0.300111
Target:  5'- cCGGCacgGCCGguGaugCCGGCGAGCAcGCCc -3'
miRNA:   3'- cGUCG---CGGCguCg--GGCCGCUUGU-UGG- -5'
30923 3' -59.1 NC_006552.1 + 62974 0.71 0.307365
Target:  5'- cCGGCGCCGUucuucuG-CCGGCGGACcugcGCCg -3'
miRNA:   3'- cGUCGCGGCGu-----CgGGCCGCUUGu---UGG- -5'
30923 3' -59.1 NC_006552.1 + 55919 0.71 0.314752
Target:  5'- aCGGCcugucGCCGgAGauCCCGGCGGACAAgCg -3'
miRNA:   3'- cGUCG-----CGGCgUC--GGGCCGCUUGUUgG- -5'
30923 3' -59.1 NC_006552.1 + 12945 0.7 0.320002
Target:  5'- cCAGCGCgcugGCcuuGGCCUGGCGGugcguucgaggccaGCAGCCg -3'
miRNA:   3'- cGUCGCGg---CG---UCGGGCCGCU--------------UGUUGG- -5'
30923 3' -59.1 NC_006552.1 + 1189 0.7 0.329925
Target:  5'- uUAGCuuCUGCuuuuGCCUGGCGGACAGCa -3'
miRNA:   3'- cGUCGc-GGCGu---CGGGCCGCUUGUUGg -5'
30923 3' -59.1 NC_006552.1 + 5081 0.7 0.337712
Target:  5'- cCAGCGCuauCGCAGCCagaaCGGCGccCAACUc -3'
miRNA:   3'- cGUCGCG---GCGUCGG----GCCGCuuGUUGG- -5'
30923 3' -59.1 NC_006552.1 + 2918 0.7 0.337712
Target:  5'- aUAGCGCCgGCGGCauGGuCGAuauucACGACCg -3'
miRNA:   3'- cGUCGCGG-CGUCGggCC-GCU-----UGUUGG- -5'
30923 3' -59.1 NC_006552.1 + 49184 0.7 0.337712
Target:  5'- uGCGGCgGCC-UGGUCCGGCuGGucaGCAACCg -3'
miRNA:   3'- -CGUCG-CGGcGUCGGGCCG-CU---UGUUGG- -5'
30923 3' -59.1 NC_006552.1 + 31406 0.7 0.344833
Target:  5'- gGCGGCGCCGCcagugguGGUCuucgCGGUGAGaguGACCg -3'
miRNA:   3'- -CGUCGCGGCG-------UCGG----GCCGCUUg--UUGG- -5'
30923 3' -59.1 NC_006552.1 + 64739 0.7 0.353683
Target:  5'- gGCGGCGCUGCAGgU-GGCGcuCAACa -3'
miRNA:   3'- -CGUCGCGGCGUCgGgCCGCuuGUUGg -5'
30923 3' -59.1 NC_006552.1 + 4946 0.7 0.353683
Target:  5'- cGCuGCGCgGuCAGCUCGGCcAGCuuGGCCu -3'
miRNA:   3'- -CGuCGCGgC-GUCGGGCCGcUUG--UUGG- -5'
30923 3' -59.1 NC_006552.1 + 54222 0.69 0.369344
Target:  5'- cCAGCGCUcuggaaaGU-GCCCuGGCGAGCAAaCCa -3'
miRNA:   3'- cGUCGCGG-------CGuCGGG-CCGCUUGUU-GG- -5'
30923 3' -59.1 NC_006552.1 + 45402 0.69 0.370181
Target:  5'- uCGGCGCCGaCGaauuccccGCCCGGgGccggcGCAGCCu -3'
miRNA:   3'- cGUCGCGGC-GU--------CGGGCCgCu----UGUUGG- -5'
30923 3' -59.1 NC_006552.1 + 59807 0.69 0.378625
Target:  5'- uGCAGa-CCGcCAGCaaGGUGAugGACCu -3'
miRNA:   3'- -CGUCgcGGC-GUCGggCCGCUugUUGG- -5'
30923 3' -59.1 NC_006552.1 + 26443 0.69 0.378625
Target:  5'- aCGGCGCCGacuCCUGGgGGccgcGCAGCCa -3'
miRNA:   3'- cGUCGCGGCgucGGGCCgCU----UGUUGG- -5'
30923 3' -59.1 NC_006552.1 + 26532 0.69 0.386334
Target:  5'- gGCGGCGCCggGguGUCCagcgucaGGCGcuCGGCCu -3'
miRNA:   3'- -CGUCGCGG--CguCGGG-------CCGCuuGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.