miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30923 3' -59.1 NC_006552.1 + 746 0.71 0.300111
Target:  5'- uGCAGCGCUc---CCCGGCGcucgauggcuccGACAACCg -3'
miRNA:   3'- -CGUCGCGGcgucGGGCCGC------------UUGUUGG- -5'
30923 3' -59.1 NC_006552.1 + 1189 0.7 0.329925
Target:  5'- uUAGCuuCUGCuuuuGCCUGGCGGACAGCa -3'
miRNA:   3'- cGUCGc-GGCGu---CGGGCCGCUUGUUGg -5'
30923 3' -59.1 NC_006552.1 + 2918 0.7 0.337712
Target:  5'- aUAGCGCCgGCGGCauGGuCGAuauucACGACCg -3'
miRNA:   3'- cGUCGCGG-CGUCGggCC-GCU-----UGUUGG- -5'
30923 3' -59.1 NC_006552.1 + 3146 0.66 0.550101
Target:  5'- aGCGGCGaCGCcugAGCCgaCGGCGAucCAuCCa -3'
miRNA:   3'- -CGUCGCgGCG---UCGG--GCCGCUu-GUuGG- -5'
30923 3' -59.1 NC_006552.1 + 3577 0.67 0.499272
Target:  5'- uGCuGGCcgaGCCGcCGGCgCCGGCaGGACuuGCCg -3'
miRNA:   3'- -CG-UCG---CGGC-GUCG-GGCCG-CUUGu-UGG- -5'
30923 3' -59.1 NC_006552.1 + 4417 0.67 0.479521
Target:  5'- aCAGgGCCGguGCcaccaccauCCGGCGuGCccuuGACCa -3'
miRNA:   3'- cGUCgCGGCguCG---------GGCCGCuUG----UUGG- -5'
30923 3' -59.1 NC_006552.1 + 4783 0.68 0.460161
Target:  5'- uGCGGCGCCaccacuaCAGCCCccaccugcGGCGGggGCGAUg -3'
miRNA:   3'- -CGUCGCGGc------GUCGGG--------CCGCU--UGUUGg -5'
30923 3' -59.1 NC_006552.1 + 4839 0.67 0.479521
Target:  5'- gGCGGuCG-CGCAGCUCaccagcaaGGCGAGCGAUUu -3'
miRNA:   3'- -CGUC-GCgGCGUCGGG--------CCGCUUGUUGG- -5'
30923 3' -59.1 NC_006552.1 + 4946 0.7 0.353683
Target:  5'- cGCuGCGCgGuCAGCUCGGCcAGCuuGGCCu -3'
miRNA:   3'- -CGuCGCGgC-GUCGGGCCGcUUG--UUGG- -5'
30923 3' -59.1 NC_006552.1 + 5081 0.7 0.337712
Target:  5'- cCAGCGCuauCGCAGCCagaaCGGCGccCAACUc -3'
miRNA:   3'- cGUCGCG---GCGUCGG----GCCGCuuGUUGG- -5'
30923 3' -59.1 NC_006552.1 + 5253 0.67 0.478543
Target:  5'- aGCAGguCGUCGCAcGCcugccgguaguugCCGGCGAGCAAg- -3'
miRNA:   3'- -CGUC--GCGGCGU-CG-------------GGCCGCUUGUUgg -5'
30923 3' -59.1 NC_006552.1 + 5590 0.67 0.529547
Target:  5'- -aAGCGCCGaagcCGGCCaGGCuGAcggucagcgcgGCAACCa -3'
miRNA:   3'- cgUCGCGGC----GUCGGgCCG-CU-----------UGUUGG- -5'
30923 3' -59.1 NC_006552.1 + 5685 0.73 0.211117
Target:  5'- gGCAGCGCUcucggcugauucgcgGCGGUCgCGGCGAACcuggaaauagauauuGGCCa -3'
miRNA:   3'- -CGUCGCGG---------------CGUCGG-GCCGCUUG---------------UUGG- -5'
30923 3' -59.1 NC_006552.1 + 6429 0.68 0.422735
Target:  5'- cGCAuuucGCaCCGC-GCCCGGCGA-CAucuCCa -3'
miRNA:   3'- -CGU----CGcGGCGuCGGGCCGCUuGUu--GG- -5'
30923 3' -59.1 NC_006552.1 + 6637 0.67 0.529547
Target:  5'- aGCGGaGCCccagGCAGCCCGGacaccccGCGAUCa -3'
miRNA:   3'- -CGUCgCGG----CGUCGGGCCgcu----UGUUGG- -5'
30923 3' -59.1 NC_006552.1 + 6754 0.66 0.581362
Target:  5'- aGUuGCGCCGCaccgucgaucaGGUcuucggcgucuUCGGCGAACGGCa -3'
miRNA:   3'- -CGuCGCGGCG-----------UCG-----------GGCCGCUUGUUGg -5'
30923 3' -59.1 NC_006552.1 + 7021 0.68 0.46979
Target:  5'- --cGCGCa-CGGCCCGGCGuGCGAa- -3'
miRNA:   3'- cguCGCGgcGUCGGGCCGCuUGUUgg -5'
30923 3' -59.1 NC_006552.1 + 7218 0.69 0.408284
Target:  5'- cGCAGCgaGCCGCuGCCgCGGgccugcgccaucaacUGGugGACCu -3'
miRNA:   3'- -CGUCG--CGGCGuCGG-GCC---------------GCUugUUGG- -5'
30923 3' -59.1 NC_006552.1 + 8153 0.67 0.529547
Target:  5'- cGCAGUaUCGCGGCCCccuccuGCGcauCGGCCg -3'
miRNA:   3'- -CGUCGcGGCGUCGGGc-----CGCuu-GUUGG- -5'
30923 3' -59.1 NC_006552.1 + 10478 0.68 0.450637
Target:  5'- cGCAGUGCCGCcuUCUGGCaucACuGCCa -3'
miRNA:   3'- -CGUCGCGGCGucGGGCCGcu-UGuUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.