miRNA display CGI


Results 1 - 20 of 117 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30923 3' -59.1 NC_006552.1 + 64739 0.7 0.353683
Target:  5'- gGCGGCGCUGCAGgU-GGCGcuCAACa -3'
miRNA:   3'- -CGUCGCGGCGUCgGgCCGCuuGUUGg -5'
30923 3' -59.1 NC_006552.1 + 64147 0.68 0.460161
Target:  5'- cGCAgcucGCGCCGC--CCUGGCGcACGcGCCg -3'
miRNA:   3'- -CGU----CGCGGCGucGGGCCGCuUGU-UGG- -5'
30923 3' -59.1 NC_006552.1 + 63817 0.68 0.450637
Target:  5'- uCGGCGCCcaggcCAGCcagccgCCGGCGGAgGAUCa -3'
miRNA:   3'- cGUCGCGGc----GUCG------GGCCGCUUgUUGG- -5'
30923 3' -59.1 NC_006552.1 + 63608 0.68 0.422735
Target:  5'- cCAGC-CCGCAGCgCUGGUuGACgGACCu -3'
miRNA:   3'- cGUCGcGGCGUCG-GGCCGcUUG-UUGG- -5'
30923 3' -59.1 NC_006552.1 + 63494 0.68 0.422735
Target:  5'- cCGGCGCCGgAGCaaCCGGa-GACAccGCCa -3'
miRNA:   3'- cGUCGCGGCgUCG--GGCCgcUUGU--UGG- -5'
30923 3' -59.1 NC_006552.1 + 63246 0.73 0.223249
Target:  5'- gGCuGUGCCuaucgccucgGCAcCCCGGCGAACAccucGCCg -3'
miRNA:   3'- -CGuCGCGG----------CGUcGGGCCGCUUGU----UGG- -5'
30923 3' -59.1 NC_006552.1 + 63138 0.67 0.509282
Target:  5'- cGCGGCGaacacccgcacaCCGCGGagcaGGCGAACcuGCCg -3'
miRNA:   3'- -CGUCGC------------GGCGUCggg-CCGCUUGu-UGG- -5'
30923 3' -59.1 NC_006552.1 + 62974 0.71 0.307365
Target:  5'- cCGGCGCCGUucuucuG-CCGGCGGACcugcGCCg -3'
miRNA:   3'- cGUCGCGGCGu-----CgGGCCGCUUGu---UGG- -5'
30923 3' -59.1 NC_006552.1 + 62758 0.72 0.253031
Target:  5'- -gGGCGCUGCcGCgCCuGCGAGCGACg -3'
miRNA:   3'- cgUCGCGGCGuCG-GGcCGCUUGUUGg -5'
30923 3' -59.1 NC_006552.1 + 61193 0.66 0.56047
Target:  5'- aGCcuGCGCCGauauCGGCUgcuggGGCGAcACAGCCa -3'
miRNA:   3'- -CGu-CGCGGC----GUCGGg----CCGCU-UGUUGG- -5'
30923 3' -59.1 NC_006552.1 + 59807 0.69 0.378625
Target:  5'- uGCAGa-CCGcCAGCaaGGUGAugGACCu -3'
miRNA:   3'- -CGUCgcGGC-GUCGggCCGCUugUUGG- -5'
30923 3' -59.1 NC_006552.1 + 59609 0.68 0.46979
Target:  5'- -aAGCGCagGCcGCCUGGCaGAACucggGCCg -3'
miRNA:   3'- cgUCGCGg-CGuCGGGCCG-CUUGu---UGG- -5'
30923 3' -59.1 NC_006552.1 + 59400 0.67 0.48935
Target:  5'- -gGGCGCgGCAGCgucaGGCGGugGCGGCg -3'
miRNA:   3'- cgUCGCGgCGUCGgg--CCGCU--UGUUGg -5'
30923 3' -59.1 NC_006552.1 + 58799 0.71 0.286003
Target:  5'- aGCAgGCGCCGCAcauGCCuUGGgGGucugcACAGCCu -3'
miRNA:   3'- -CGU-CGCGGCGU---CGG-GCCgCU-----UGUUGG- -5'
30923 3' -59.1 NC_006552.1 + 58618 0.66 0.580314
Target:  5'- uCGGUgGCCGC-GCCgGGCaGAcugaaccGCGACCg -3'
miRNA:   3'- cGUCG-CGGCGuCGGgCCG-CU-------UGUUGG- -5'
30923 3' -59.1 NC_006552.1 + 57865 0.68 0.441223
Target:  5'- gGCAGUGUgGCGGCaCCaGgGAACAcguuCCa -3'
miRNA:   3'- -CGUCGCGgCGUCG-GGcCgCUUGUu---GG- -5'
30923 3' -59.1 NC_006552.1 + 57680 0.67 0.519375
Target:  5'- aCAGCcaaGCAG-CCGGCGGcCAACCu -3'
miRNA:   3'- cGUCGcggCGUCgGGCCGCUuGUUGG- -5'
30923 3' -59.1 NC_006552.1 + 57316 0.66 0.550101
Target:  5'- cGC-GCGCaGUGGCCUGGC--GCAGCUc -3'
miRNA:   3'- -CGuCGCGgCGUCGGGCCGcuUGUUGG- -5'
30923 3' -59.1 NC_006552.1 + 56859 0.83 0.041539
Target:  5'- gGCAGCGCCGCGGCgagCGGCGAACGc-- -3'
miRNA:   3'- -CGUCGCGGCGUCGg--GCCGCUUGUugg -5'
30923 3' -59.1 NC_006552.1 + 55919 0.71 0.314752
Target:  5'- aCGGCcugucGCCGgAGauCCCGGCGGACAAgCg -3'
miRNA:   3'- cGUCG-----CGGCgUC--GGGCCGCUUGUUgG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.