miRNA display CGI


Results 1 - 20 of 117 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30923 3' -59.1 NC_006552.1 + 21992 0.65 0.590818
Target:  5'- uGCAGCGCCcCAgucGCCUgaucgcugacgguGGCGGcguccuCGACCa -3'
miRNA:   3'- -CGUCGCGGcGU---CGGG-------------CCGCUu-----GUUGG- -5'
30923 3' -59.1 NC_006552.1 + 17536 0.72 0.240743
Target:  5'- uCGGCGaUCGCGGCgCGGUcuucggGAGCAGCCu -3'
miRNA:   3'- cGUCGC-GGCGUCGgGCCG------CUUGUUGG- -5'
30923 3' -59.1 NC_006552.1 + 48388 0.72 0.240743
Target:  5'- cGCGGCGCaacgccgaaaCGCA-CCCGGaCG-ACAACCg -3'
miRNA:   3'- -CGUCGCG----------GCGUcGGGCC-GCuUGUUGG- -5'
30923 3' -59.1 NC_006552.1 + 31903 0.72 0.246824
Target:  5'- cCAGCGCggCGCGGUUCGGauCGAACGACUc -3'
miRNA:   3'- cGUCGCG--GCGUCGGGCC--GCUUGUUGG- -5'
30923 3' -59.1 NC_006552.1 + 62758 0.72 0.253031
Target:  5'- -gGGCGCUGCcGCgCCuGCGAGCGACg -3'
miRNA:   3'- cgUCGCGGCGuCG-GGcCGCUUGUUGg -5'
30923 3' -59.1 NC_006552.1 + 15572 0.72 0.253031
Target:  5'- uGCuGCGCCGCcuGGUCCagGGCGAA--GCCg -3'
miRNA:   3'- -CGuCGCGGCG--UCGGG--CCGCUUguUGG- -5'
30923 3' -59.1 NC_006552.1 + 41123 0.72 0.26583
Target:  5'- aGCcGCGUCGCGGuCCUGcGCGAugAuGCCg -3'
miRNA:   3'- -CGuCGCGGCGUC-GGGC-CGCUugU-UGG- -5'
30923 3' -59.1 NC_006552.1 + 11333 0.72 0.272423
Target:  5'- gGCGGCGUCGaUGGCUuccuCGGUGAcgGCGGCCg -3'
miRNA:   3'- -CGUCGCGGC-GUCGG----GCCGCU--UGUUGG- -5'
30923 3' -59.1 NC_006552.1 + 25412 0.71 0.286003
Target:  5'- aGCAgGUGCUGCcGuCCCaGCGAACAggGCCa -3'
miRNA:   3'- -CGU-CGCGGCGuC-GGGcCGCUUGU--UGG- -5'
30923 3' -59.1 NC_006552.1 + 63246 0.73 0.223249
Target:  5'- gGCuGUGCCuaucgccucgGCAcCCCGGCGAACAccucGCCg -3'
miRNA:   3'- -CGuCGCGG----------CGUcGGGCCGCUUGU----UGG- -5'
30923 3' -59.1 NC_006552.1 + 5685 0.73 0.211117
Target:  5'- gGCAGCGCUcucggcugauucgcgGCGGUCgCGGCGAACcuggaaauagauauuGGCCa -3'
miRNA:   3'- -CGUCGCGG---------------CGUCGG-GCCGCUUG---------------UUGG- -5'
30923 3' -59.1 NC_006552.1 + 53304 0.74 0.203695
Target:  5'- cGCAGC-CCGCcGCgCGGCGcacaacaucagcuucGACGACCg -3'
miRNA:   3'- -CGUCGcGGCGuCGgGCCGC---------------UUGUUGG- -5'
30923 3' -59.1 NC_006552.1 + 44565 0.77 0.118944
Target:  5'- gGCAGCGCCuGCuGCCUGGCacgaguGAGCAGgCg -3'
miRNA:   3'- -CGUCGCGG-CGuCGGGCCG------CUUGUUgG- -5'
30923 3' -59.1 NC_006552.1 + 44376 0.77 0.120235
Target:  5'- aGCAGCcggucggaggguccaGUCaGCAGCCCGGCGAuuGCGcuGCCg -3'
miRNA:   3'- -CGUCG---------------CGG-CGUCGGGCCGCU--UGU--UGG- -5'
30923 3' -59.1 NC_006552.1 + 44796 0.76 0.145029
Target:  5'- aCAGCGgcaaccgugaaucguCCGCccuCCCGGCGAACGGCCu -3'
miRNA:   3'- cGUCGC---------------GGCGuc-GGGCCGCUUGUUGG- -5'
30923 3' -59.1 NC_006552.1 + 50512 0.75 0.151318
Target:  5'- aCGGCGCCgGCAGCCgucaaGCGAGCAACa -3'
miRNA:   3'- cGUCGCGG-CGUCGGgc---CGCUUGUUGg -5'
30923 3' -59.1 NC_006552.1 + 15350 0.75 0.168136
Target:  5'- uGCAGCGCCGCAGgCUGcuCGAGCuuCUg -3'
miRNA:   3'- -CGUCGCGGCGUCgGGCc-GCUUGuuGG- -5'
30923 3' -59.1 NC_006552.1 + 10695 0.74 0.177158
Target:  5'- uCAGUGCCGCGGUgccagCCGGUaucucgacGAACGGCCu -3'
miRNA:   3'- cGUCGCGGCGUCG-----GGCCG--------CUUGUUGG- -5'
30923 3' -59.1 NC_006552.1 + 10789 0.74 0.195996
Target:  5'- -uGGCGCCGaCGGCauugcguCCGGCGAACGAgUa -3'
miRNA:   3'- cgUCGCGGC-GUCG-------GGCCGCUUGUUgG- -5'
30923 3' -59.1 NC_006552.1 + 28686 0.74 0.201617
Target:  5'- gGCGGCGCCacGCcGCCUGGCaaGAuCGGCCu -3'
miRNA:   3'- -CGUCGCGG--CGuCGGGCCG--CUuGUUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.