miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30923 5' -54.5 NC_006552.1 + 10819 0.76 0.275113
Target:  5'- aGUACUgcacaggcgguUGUUCGCCGGGCuGCGGcgcUGCCGa -3'
miRNA:   3'- -CAUGA-----------GCAAGCGGCCUG-CGUU---ACGGC- -5'
30923 5' -54.5 NC_006552.1 + 32688 0.75 0.303883
Target:  5'- cUGCUUGgugucgUCGCCGGccgGCGCGggGCCGg -3'
miRNA:   3'- cAUGAGCa-----AGCGGCC---UGCGUuaCGGC- -5'
30923 5' -54.5 NC_006552.1 + 29548 0.67 0.726283
Target:  5'- aGUACg-GaUCGCCGGugGCGGUaCCa -3'
miRNA:   3'- -CAUGagCaAGCGGCCugCGUUAcGGc -5'
30923 5' -54.5 NC_006552.1 + 12600 0.67 0.736747
Target:  5'- uGUGCuUCGUcucgaugaugUCGCCGGcCGUAGucUGCCc -3'
miRNA:   3'- -CAUG-AGCA----------AGCGGCCuGCGUU--ACGGc -5'
30923 5' -54.5 NC_006552.1 + 49860 0.67 0.757352
Target:  5'- -gGCUCGacgccgCGUCGGACGCcc-GCUGg -3'
miRNA:   3'- caUGAGCaa----GCGGCCUGCGuuaCGGC- -5'
30923 5' -54.5 NC_006552.1 + 36410 0.67 0.766466
Target:  5'- -cGCUCGgagaCGCCuuggcuuGGGCGgCAGUGUCGg -3'
miRNA:   3'- caUGAGCaa--GCGG-------CCUGC-GUUACGGC- -5'
30923 5' -54.5 NC_006552.1 + 37013 0.67 0.767472
Target:  5'- cUGCUCuucaucUUGaCCGGACGCGcUGCCa -3'
miRNA:   3'- cAUGAGca----AGC-GGCCUGCGUuACGGc -5'
30923 5' -54.5 NC_006552.1 + 51397 0.66 0.815806
Target:  5'- aGUACgCGacgcUGCCGGACGcCAAUaccGCCGa -3'
miRNA:   3'- -CAUGaGCaa--GCGGCCUGC-GUUA---CGGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.