Results 21 - 27 of 27 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30924 | 3' | -56.2 | NC_006552.1 | + | 47673 | 0.66 | 0.661954 |
Target: 5'- gGAUC-UCAGGUCccccgagaaAGCAuUCGCCcagccggagGUGGCg -3' miRNA: 3'- -CUAGuAGUCCGG---------UCGU-AGCGG---------CACCG- -5' |
|||||||
30924 | 3' | -56.2 | NC_006552.1 | + | 51521 | 0.67 | 0.607488 |
Target: 5'- cAUCGaggCAGGCCAGauCAUCgacGCCGaGGCg -3' miRNA: 3'- cUAGUa--GUCCGGUC--GUAG---CGGCaCCG- -5' |
|||||||
30924 | 3' | -56.2 | NC_006552.1 | + | 53987 | 0.67 | 0.651076 |
Target: 5'- --gCAggCAGGCCAggcGCGUgGCCcUGGCc -3' miRNA: 3'- cuaGUa-GUCCGGU---CGUAgCGGcACCG- -5' |
|||||||
30924 | 3' | -56.2 | NC_006552.1 | + | 55676 | 0.68 | 0.574982 |
Target: 5'- -uUCAUCGGcuGCCAGgAaggggucgaUCGCCG-GGCg -3' miRNA: 3'- cuAGUAGUC--CGGUCgU---------AGCGGCaCCG- -5' |
|||||||
30924 | 3' | -56.2 | NC_006552.1 | + | 58348 | 0.71 | 0.38566 |
Target: 5'- -cUCGcgGGGgCAGUuUCGCCGUGGCc -3' miRNA: 3'- cuAGUagUCCgGUCGuAGCGGCACCG- -5' |
|||||||
30924 | 3' | -56.2 | NC_006552.1 | + | 60537 | 0.7 | 0.454848 |
Target: 5'- --cCGUCucGGCCAGCAccguucgccggcgacUCGCCGcaGGCa -3' miRNA: 3'- cuaGUAGu-CCGGUCGU---------------AGCGGCa-CCG- -5' |
|||||||
30924 | 3' | -56.2 | NC_006552.1 | + | 63816 | 0.68 | 0.574982 |
Target: 5'- -uUCGgcgccCAGGCCAGCca-GCCGccGGCg -3' miRNA: 3'- cuAGUa----GUCCGGUCGuagCGGCa-CCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home