Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30924 | 3' | -56.2 | NC_006552.1 | + | 18049 | 0.7 | 0.474676 |
Target: 5'- cAUCAggcguUCGGGCCAGCAgguucuccacugcgCGCUGguuuugGGCa -3' miRNA: 3'- cUAGU-----AGUCCGGUCGUa-------------GCGGCa-----CCG- -5' |
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30924 | 3' | -56.2 | NC_006552.1 | + | 5425 | 0.69 | 0.480709 |
Target: 5'- --cCAUCAGGCUGcGCGccaguuguUCGCCGcgcUGGCg -3' miRNA: 3'- cuaGUAGUCCGGU-CGU--------AGCGGC---ACCG- -5' |
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30924 | 3' | -56.2 | NC_006552.1 | + | 23989 | 0.69 | 0.511407 |
Target: 5'- --gCAUCAGGCCGGUGUCGUCa---- -3' miRNA: 3'- cuaGUAGUCCGGUCGUAGCGGcaccg -5' |
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30924 | 3' | -56.2 | NC_006552.1 | + | 6836 | 0.69 | 0.511407 |
Target: 5'- cGAUCAUCAGGgCAGCAgccuucCGaCCGUccuuGCg -3' miRNA: 3'- -CUAGUAGUCCgGUCGUa-----GC-GGCAc---CG- -5' |
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30924 | 3' | -56.2 | NC_006552.1 | + | 41565 | 0.69 | 0.511407 |
Target: 5'- gGGUCAUCGGGUaccggcuugaaGGCAUUGCCacUGGUa -3' miRNA: 3'- -CUAGUAGUCCGg----------UCGUAGCGGc-ACCG- -5' |
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30924 | 3' | -56.2 | NC_006552.1 | + | 44364 | 0.69 | 0.532318 |
Target: 5'- -uUCGUCAGuGCCAGCA--GCCGgucggagGGUc -3' miRNA: 3'- cuAGUAGUC-CGGUCGUagCGGCa------CCG- -5' |
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30924 | 3' | -56.2 | NC_006552.1 | + | 32696 | 0.66 | 0.715728 |
Target: 5'- uGUCGUCGccGGCCGGCGcgggGCCgGUGGa -3' miRNA: 3'- cUAGUAGU--CCGGUCGUag--CGG-CACCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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