miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30924 3' -56.2 NC_006552.1 + 18049 0.7 0.474676
Target:  5'- cAUCAggcguUCGGGCCAGCAgguucuccacugcgCGCUGguuuugGGCa -3'
miRNA:   3'- cUAGU-----AGUCCGGUCGUa-------------GCGGCa-----CCG- -5'
30924 3' -56.2 NC_006552.1 + 5425 0.69 0.480709
Target:  5'- --cCAUCAGGCUGcGCGccaguuguUCGCCGcgcUGGCg -3'
miRNA:   3'- cuaGUAGUCCGGU-CGU--------AGCGGC---ACCG- -5'
30924 3' -56.2 NC_006552.1 + 23989 0.69 0.511407
Target:  5'- --gCAUCAGGCCGGUGUCGUCa---- -3'
miRNA:   3'- cuaGUAGUCCGGUCGUAGCGGcaccg -5'
30924 3' -56.2 NC_006552.1 + 6836 0.69 0.511407
Target:  5'- cGAUCAUCAGGgCAGCAgccuucCGaCCGUccuuGCg -3'
miRNA:   3'- -CUAGUAGUCCgGUCGUa-----GC-GGCAc---CG- -5'
30924 3' -56.2 NC_006552.1 + 41565 0.69 0.511407
Target:  5'- gGGUCAUCGGGUaccggcuugaaGGCAUUGCCacUGGUa -3'
miRNA:   3'- -CUAGUAGUCCGg----------UCGUAGCGGc-ACCG- -5'
30924 3' -56.2 NC_006552.1 + 44364 0.69 0.532318
Target:  5'- -uUCGUCAGuGCCAGCA--GCCGgucggagGGUc -3'
miRNA:   3'- cuAGUAGUC-CGGUCGUagCGGCa------CCG- -5'
30924 3' -56.2 NC_006552.1 + 32696 0.66 0.715728
Target:  5'- uGUCGUCGccGGCCGGCGcgggGCCgGUGGa -3'
miRNA:   3'- cUAGUAGU--CCGGUCGUag--CGG-CACCg -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.