Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30932 | 5' | -56.1 | NC_006552.1 | + | 57960 | 0.75 | 0.22141 |
Target: 5'- cACCUGCUGGAGgGGauggGCuACCAGGUg -3' miRNA: 3'- cUGGACGACUUCaCCg---CGuUGGUCCG- -5' |
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30932 | 5' | -56.1 | NC_006552.1 | + | 61769 | 0.74 | 0.263284 |
Target: 5'- aGGCCUGUUGcGGUGGCGgccucccucaaccaCAAgCAGGCc -3' miRNA: 3'- -CUGGACGACuUCACCGC--------------GUUgGUCCG- -5' |
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30932 | 5' | -56.1 | NC_006552.1 | + | 53612 | 0.73 | 0.300793 |
Target: 5'- cGCCgGCUGAGGUGGagGCcugAGCCAuGGCa -3' miRNA: 3'- cUGGaCGACUUCACCg-CG---UUGGU-CCG- -5' |
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30932 | 5' | -56.1 | NC_006552.1 | + | 50269 | 0.71 | 0.391367 |
Target: 5'- gGGCCUccGCaUGAAGccaaaugcgacUGGCGCccGCCGGGCg -3' miRNA: 3'- -CUGGA--CG-ACUUC-----------ACCGCGu-UGGUCCG- -5' |
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30932 | 5' | -56.1 | NC_006552.1 | + | 16034 | 0.7 | 0.429385 |
Target: 5'- cGGCCUGCgcagcagcaccagaAAGUGGCccaGUAGCCGGGUc -3' miRNA: 3'- -CUGGACGac------------UUCACCG---CGUUGGUCCG- -5' |
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30932 | 5' | -56.1 | NC_006552.1 | + | 22006 | 0.7 | 0.456562 |
Target: 5'- cGCCUgaucGCUGAcGGUGGCGgcguccuCGACCAGGa -3' miRNA: 3'- cUGGA----CGACU-UCACCGC-------GUUGGUCCg -5' |
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30932 | 5' | -56.1 | NC_006552.1 | + | 57456 | 0.7 | 0.45755 |
Target: 5'- aGACUacuuuUGCggcgGAGGUGGCGCcgguaCGGGCu -3' miRNA: 3'- -CUGG-----ACGa---CUUCACCGCGuug--GUCCG- -5' |
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30932 | 5' | -56.1 | NC_006552.1 | + | 45859 | 0.7 | 0.45755 |
Target: 5'- cACCUGCg-----GGCGUcugAACCAGGCg -3' miRNA: 3'- cUGGACGacuucaCCGCG---UUGGUCCG- -5' |
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30932 | 5' | -56.1 | NC_006552.1 | + | 28294 | 0.7 | 0.46749 |
Target: 5'- cGAUCgcGUUGAAGUGGaucgacagaGCcGCCAGGCc -3' miRNA: 3'- -CUGGa-CGACUUCACCg--------CGuUGGUCCG- -5' |
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30932 | 5' | -56.1 | NC_006552.1 | + | 58599 | 0.69 | 0.508304 |
Target: 5'- aGCCcGUUGAuggugggcgucGGUGGcCGCG-CCGGGCa -3' miRNA: 3'- cUGGaCGACU-----------UCACC-GCGUuGGUCCG- -5' |
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30932 | 5' | -56.1 | NC_006552.1 | + | 29839 | 0.68 | 0.52927 |
Target: 5'- --aCUGCUGGAGgGGaCGUAGCCgcuGGGUa -3' miRNA: 3'- cugGACGACUUCaCC-GCGUUGG---UCCG- -5' |
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30932 | 5' | -56.1 | NC_006552.1 | + | 47700 | 0.68 | 0.561284 |
Target: 5'- cGCCcaGCcgGAGGUGGCGCGuaacGCC-GGCc -3' miRNA: 3'- cUGGa-CGa-CUUCACCGCGU----UGGuCCG- -5' |
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30932 | 5' | -56.1 | NC_006552.1 | + | 32663 | 0.68 | 0.581835 |
Target: 5'- gGGCCUGCUGAGccuGCGCGAUCAccugcuuGGUg -3' miRNA: 3'- -CUGGACGACUUcacCGCGUUGGU-------CCG- -5' |
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30932 | 5' | -56.1 | NC_006552.1 | + | 49189 | 0.67 | 0.593804 |
Target: 5'- cGGCCUGgUccGGcUGGUcaGCAACCGGGUg -3' miRNA: 3'- -CUGGACgAcuUC-ACCG--CGUUGGUCCG- -5' |
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30932 | 5' | -56.1 | NC_006552.1 | + | 58390 | 0.67 | 0.593804 |
Target: 5'- aGACCgGCUacGGUGaGCGCGAa-GGGCa -3' miRNA: 3'- -CUGGaCGAcuUCAC-CGCGUUggUCCG- -5' |
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30932 | 5' | -56.1 | NC_006552.1 | + | 56922 | 0.67 | 0.615659 |
Target: 5'- cGCCcgcGCUGGAcUGGCGCAACUAccccgaugcguuGGCc -3' miRNA: 3'- cUGGa--CGACUUcACCGCGUUGGU------------CCG- -5' |
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30932 | 5' | -56.1 | NC_006552.1 | + | 40354 | 0.67 | 0.625516 |
Target: 5'- -uCCUGgUGGaaccAGaUGGCGCAGCCAucgcugcGGCc -3' miRNA: 3'- cuGGACgACU----UC-ACCGCGUUGGU-------CCG- -5' |
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30932 | 5' | -56.1 | NC_006552.1 | + | 15981 | 0.67 | 0.63757 |
Target: 5'- aGCCUGCUGGA---GCGCGGCCugcuGCa -3' miRNA: 3'- cUGGACGACUUcacCGCGUUGGuc--CG- -5' |
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30932 | 5' | -56.1 | NC_006552.1 | + | 62996 | 0.67 | 0.648523 |
Target: 5'- gGACCUGCgccgccagguguUGGAGaaaaUGGCcgcccagcGCAACCuGGCc -3' miRNA: 3'- -CUGGACG------------ACUUC----ACCG--------CGUUGGuCCG- -5' |
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30932 | 5' | -56.1 | NC_006552.1 | + | 13820 | 0.66 | 0.658368 |
Target: 5'- aGCC-GCUGuAGGUgccGGCGCGcacguucAUCAGGCg -3' miRNA: 3'- cUGGaCGAC-UUCA---CCGCGU-------UGGUCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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