miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30934 5' -62.3 NC_006552.1 + 55471 0.66 0.424343
Target:  5'- -gGCGAUCGCCCUGcUGCaccacaGCGaagGgGCGg -3'
miRNA:   3'- cgCGCUGGCGGGAC-ACG------CGCa--CgCGU- -5'
30934 5' -62.3 NC_006552.1 + 20632 0.66 0.406612
Target:  5'- cGCGCGGgugguuUCGCCaCUGU-CGCGUuCGCGg -3'
miRNA:   3'- -CGCGCU------GGCGG-GACAcGCGCAcGCGU- -5'
30934 5' -62.3 NC_006552.1 + 56463 0.66 0.406612
Target:  5'- cGUG-GGCCGCCCUGUcaggcaGgGCG-GCGUc -3'
miRNA:   3'- -CGCgCUGGCGGGACA------CgCGCaCGCGu -5'
30934 5' -62.3 NC_006552.1 + 51228 0.66 0.380907
Target:  5'- uGCGCGugaaugaaGCCGCCgaUGaGCGCcUGCGCc -3'
miRNA:   3'- -CGCGC--------UGGCGGg-ACaCGCGcACGCGu -5'
30934 5' -62.3 NC_006552.1 + 33511 0.67 0.372584
Target:  5'- aGCGCGAacagCGCCUUgcuggaacugGUGCGCaggcGCGCAg -3'
miRNA:   3'- -CGCGCUg---GCGGGA----------CACGCGca--CGCGU- -5'
30934 5' -62.3 NC_006552.1 + 2053 0.67 0.372584
Target:  5'- gGCGCuuGAgCGCgCCg--GCGuCGUGCGCGg -3'
miRNA:   3'- -CGCG--CUgGCG-GGacaCGC-GCACGCGU- -5'
30934 5' -62.3 NC_006552.1 + 52964 0.67 0.348363
Target:  5'- gGUGCGGCa-UCCggGUGCGCGUucaucgagcGCGCAg -3'
miRNA:   3'- -CGCGCUGgcGGGa-CACGCGCA---------CGCGU- -5'
30934 5' -62.3 NC_006552.1 + 39550 0.69 0.269394
Target:  5'- -gGCGucacCCGCCaguCUGUGCGCGUGacaGCc -3'
miRNA:   3'- cgCGCu---GGCGG---GACACGCGCACg--CGu -5'
30934 5' -62.3 NC_006552.1 + 22521 0.7 0.238554
Target:  5'- gGUG-GGCCGCCUUGUGaucgGCGaGCGCGg -3'
miRNA:   3'- -CGCgCUGGCGGGACACg---CGCaCGCGU- -5'
30934 5' -62.3 NC_006552.1 + 64153 0.72 0.163394
Target:  5'- uCGCG-CCGCCCUG-GCGCacGCGCc -3'
miRNA:   3'- cGCGCuGGCGGGACaCGCGcaCGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.