miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30935 5' -51.6 NC_006552.1 + 55165 0.79 0.275063
Target:  5'- cGGCAcCC-CGACCGUGCuccaugCGCGCg -3'
miRNA:   3'- aCCGUuGGuGUUGGUACGuua---GCGCG- -5'
30935 5' -51.6 NC_006552.1 + 35421 0.79 0.275063
Target:  5'- aUGGCAGCCugGGCCGcaGCcuUCGCGUc -3'
miRNA:   3'- -ACCGUUGGugUUGGUa-CGuuAGCGCG- -5'
30935 5' -51.6 NC_006552.1 + 23133 0.75 0.408358
Target:  5'- cUGGUAGgCguaGAgCAUGCAAUCGCGCu -3'
miRNA:   3'- -ACCGUUgGug-UUgGUACGUUAGCGCG- -5'
30935 5' -51.6 NC_006552.1 + 43998 0.75 0.427634
Target:  5'- cGGCGACCAgGGCCAgGCGAaccUCGC-Cg -3'
miRNA:   3'- aCCGUUGGUgUUGGUaCGUU---AGCGcG- -5'
30935 5' -51.6 NC_006552.1 + 12188 0.75 0.437472
Target:  5'- gUGGCGGCCAguGCCuUGUcgGAcCGCGCa -3'
miRNA:   3'- -ACCGUUGGUguUGGuACG--UUaGCGCG- -5'
30935 5' -51.6 NC_006552.1 + 44182 0.74 0.488509
Target:  5'- cGGCGcGCCgACGGuCCAUGUcuUCGCGCu -3'
miRNA:   3'- aCCGU-UGG-UGUU-GGUACGuuAGCGCG- -5'
30935 5' -51.6 NC_006552.1 + 4818 0.74 0.499054
Target:  5'- gGGCGAUgCGCAcgcGCaCAggGCGGUCGCGCa -3'
miRNA:   3'- aCCGUUG-GUGU---UG-GUa-CGUUAGCGCG- -5'
30935 5' -51.6 NC_006552.1 + 53145 0.74 0.499054
Target:  5'- cGGCAacACCAuCGAUCGcuuugagGCGAUCGUGCg -3'
miRNA:   3'- aCCGU--UGGU-GUUGGUa------CGUUAGCGCG- -5'
30935 5' -51.6 NC_006552.1 + 8119 0.73 0.552051
Target:  5'- cGGcCAugCAuCAGCCAucUGCGccaggugGUCGCGCa -3'
miRNA:   3'- aCC-GUugGU-GUUGGU--ACGU-------UAGCGCG- -5'
30935 5' -51.6 NC_006552.1 + 62226 0.73 0.564198
Target:  5'- gGGCGgaucACCGagucCAGCCAcGgAAUCGCGCg -3'
miRNA:   3'- aCCGU----UGGU----GUUGGUaCgUUAGCGCG- -5'
30935 5' -51.6 NC_006552.1 + 44390 0.72 0.620112
Target:  5'- gGGU--CCagucaGCAGCCcgGCGAUUGCGCu -3'
miRNA:   3'- aCCGuuGG-----UGUUGGuaCGUUAGCGCG- -5'
30935 5' -51.6 NC_006552.1 + 44608 0.72 0.620112
Target:  5'- cGGCAAUgAacGCCAUGCg--CGCGCc -3'
miRNA:   3'- aCCGUUGgUguUGGUACGuuaGCGCG- -5'
30935 5' -51.6 NC_006552.1 + 15977 0.71 0.642622
Target:  5'- cGGCAGCCugcuggagcGCGGCCugcUGCAccaacuggucaGUUGCGCc -3'
miRNA:   3'- aCCGUUGG---------UGUUGGu--ACGU-----------UAGCGCG- -5'
30935 5' -51.6 NC_006552.1 + 54680 0.71 0.642622
Target:  5'- cGGCAACCAUGACCGaGUGGcUGCGa -3'
miRNA:   3'- aCCGUUGGUGUUGGUaCGUUaGCGCg -5'
30935 5' -51.6 NC_006552.1 + 20523 0.71 0.653867
Target:  5'- cGGCcGCCuuCAGCCGgccuUGC--UCGCGCa -3'
miRNA:   3'- aCCGuUGGu-GUUGGU----ACGuuAGCGCG- -5'
30935 5' -51.6 NC_006552.1 + 55339 0.71 0.653867
Target:  5'- aGGCGACCGCGACUucGUGgGGUUcaGcCGCg -3'
miRNA:   3'- aCCGUUGGUGUUGG--UACgUUAG--C-GCG- -5'
30935 5' -51.6 NC_006552.1 + 5129 0.71 0.665092
Target:  5'- cGGCAccugCACGGCgAUGCA-UUGCGCa -3'
miRNA:   3'- aCCGUug--GUGUUGgUACGUuAGCGCG- -5'
30935 5' -51.6 NC_006552.1 + 11685 0.71 0.665092
Target:  5'- cUGGgGGCCAUGACgAUGCGGUucugccCGCGUu -3'
miRNA:   3'- -ACCgUUGGUGUUGgUACGUUA------GCGCG- -5'
30935 5' -51.6 NC_006552.1 + 28641 0.71 0.665092
Target:  5'- aGGUAACgGCGGCCGUagGCAAUCaugGCuGCa -3'
miRNA:   3'- aCCGUUGgUGUUGGUA--CGUUAG---CG-CG- -5'
30935 5' -51.6 NC_006552.1 + 13214 0.71 0.665092
Target:  5'- cGGCggUCGCcuccCCAcUGCGcgCGCGCu -3'
miRNA:   3'- aCCGuuGGUGuu--GGU-ACGUuaGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.