miRNA display CGI


Results 1 - 20 of 107 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30935 5' -51.6 NC_006552.1 + 2158 0.67 0.875061
Target:  5'- cUGGCcACCAUAACCccucucccGCGAUagcccauacCGCGCc -3'
miRNA:   3'- -ACCGuUGGUGUUGGua------CGUUA---------GCGCG- -5'
30935 5' -51.6 NC_006552.1 + 2487 0.67 0.858642
Target:  5'- cGGCAugCACGAguUCGU-CGA-CGCGCu -3'
miRNA:   3'- aCCGUugGUGUU--GGUAcGUUaGCGCG- -5'
30935 5' -51.6 NC_006552.1 + 2701 0.66 0.920331
Target:  5'- gUGGCGcauggacgcuucuucAgCGCAGCUugGCGccAUCGCGCg -3'
miRNA:   3'- -ACCGU---------------UgGUGUUGGuaCGU--UAGCGCG- -5'
30935 5' -51.6 NC_006552.1 + 3148 0.68 0.810537
Target:  5'- cGGCGacGCCugAGCCGacgGCGAUCcauccauccggcgaGUGCg -3'
miRNA:   3'- aCCGU--UGGugUUGGUa--CGUUAG--------------CGCG- -5'
30935 5' -51.6 NC_006552.1 + 3967 0.68 0.813421
Target:  5'- -aGCGuACCAgcauCAGCCAUGCAG-CGUGUg -3'
miRNA:   3'- acCGU-UGGU----GUUGGUACGUUaGCGCG- -5'
30935 5' -51.6 NC_006552.1 + 4818 0.74 0.499054
Target:  5'- gGGCGAUgCGCAcgcGCaCAggGCGGUCGCGCa -3'
miRNA:   3'- aCCGUUG-GUGU---UG-GUa-CGUUAGCGCG- -5'
30935 5' -51.6 NC_006552.1 + 5065 0.68 0.832179
Target:  5'- cUGGCcACCAggcCAGCCA-GCGcuAUCGCaGCc -3'
miRNA:   3'- -ACCGuUGGU---GUUGGUaCGU--UAGCG-CG- -5'
30935 5' -51.6 NC_006552.1 + 5129 0.71 0.665092
Target:  5'- cGGCAccugCACGGCgAUGCA-UUGCGCa -3'
miRNA:   3'- aCCGUug--GUGUUGgUACGUuAGCGCG- -5'
30935 5' -51.6 NC_006552.1 + 8119 0.73 0.552051
Target:  5'- cGGcCAugCAuCAGCCAucUGCGccaggugGUCGCGCa -3'
miRNA:   3'- aCC-GUugGU-GUUGGU--ACGU-------UAGCGCG- -5'
30935 5' -51.6 NC_006552.1 + 8173 0.67 0.875061
Target:  5'- cUGcGCAucgGCCGCGuCCAU-CAccugGUCGCGCa -3'
miRNA:   3'- -AC-CGU---UGGUGUuGGUAcGU----UAGCGCG- -5'
30935 5' -51.6 NC_006552.1 + 9308 0.68 0.841233
Target:  5'- cGGCGuCCACcACCcUGCuGUCGC-Cg -3'
miRNA:   3'- aCCGUuGGUGuUGGuACGuUAGCGcG- -5'
30935 5' -51.6 NC_006552.1 + 9381 0.71 0.676284
Target:  5'- cUGGCcacuGCCGCGcacgucgccCCGUGCGG-CGCGCu -3'
miRNA:   3'- -ACCGu---UGGUGUu--------GGUACGUUaGCGCG- -5'
30935 5' -51.6 NC_006552.1 + 10623 0.67 0.885933
Target:  5'- aUGGCGccagcagucucaccgGCCACGGCgAUGCuggccugauGAUCGCu- -3'
miRNA:   3'- -ACCGU---------------UGGUGUUGgUACG---------UUAGCGcg -5'
30935 5' -51.6 NC_006552.1 + 10874 0.69 0.763242
Target:  5'- cGGCuugucGAUCACcACCAUGCg--CGCGUu -3'
miRNA:   3'- aCCG-----UUGGUGuUGGUACGuuaGCGCG- -5'
30935 5' -51.6 NC_006552.1 + 11051 0.68 0.807634
Target:  5'- aGGCGGCCGCcgggcuucagcaGGCUguaggcgugcuguacGUGCuggauGUCGCGCc -3'
miRNA:   3'- aCCGUUGGUG------------UUGG---------------UACGu----UAGCGCG- -5'
30935 5' -51.6 NC_006552.1 + 11685 0.71 0.665092
Target:  5'- cUGGgGGCCAUGACgAUGCGGUucugccCGCGUu -3'
miRNA:   3'- -ACCgUUGGUGUUGgUACGUUA------GCGCG- -5'
30935 5' -51.6 NC_006552.1 + 12188 0.75 0.437472
Target:  5'- gUGGCGGCCAguGCCuUGUcgGAcCGCGCa -3'
miRNA:   3'- -ACCGUUGGUguUGGuACG--UUaGCGCG- -5'
30935 5' -51.6 NC_006552.1 + 12291 0.66 0.911415
Target:  5'- cGGCccgcucguugagGGCCugAGCCAUggugcGUAGUCGCucgGCg -3'
miRNA:   3'- aCCG------------UUGGugUUGGUA-----CGUUAGCG---CG- -5'
30935 5' -51.6 NC_006552.1 + 12923 0.67 0.850057
Target:  5'- gUGGUGuucGCCACaAGCUcgGCcagCGCGCu -3'
miRNA:   3'- -ACCGU---UGGUG-UUGGuaCGuuaGCGCG- -5'
30935 5' -51.6 NC_006552.1 + 13214 0.71 0.665092
Target:  5'- cGGCggUCGCcuccCCAcUGCGcgCGCGCu -3'
miRNA:   3'- aCCGuuGGUGuu--GGU-ACGUuaGCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.