miRNA display CGI


Results 21 - 40 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30935 5' -51.6 NC_006552.1 + 13495 0.67 0.872664
Target:  5'- gGGUAGCCAuccuugccgaaguuCAcCCcgGCAAggUGCGCg -3'
miRNA:   3'- aCCGUUGGU--------------GUuGGuaCGUUa-GCGCG- -5'
30935 5' -51.6 NC_006552.1 + 13720 0.66 0.897706
Target:  5'- uUGGCcuucugccaGGCCACGAauGUGuCGAUgGCGCg -3'
miRNA:   3'- -ACCG---------UUGGUGUUggUAC-GUUAgCGCG- -5'
30935 5' -51.6 NC_006552.1 + 13894 0.67 0.88288
Target:  5'- gUGGCuugcuCCACGGCCGccUGCugagcAUCgGUGCg -3'
miRNA:   3'- -ACCGuu---GGUGUUGGU--ACGu----UAG-CGCG- -5'
30935 5' -51.6 NC_006552.1 + 14094 0.68 0.822905
Target:  5'- cGGcCGGCCG-GGCCGcGCuucauGUCGCGCg -3'
miRNA:   3'- aCC-GUUGGUgUUGGUaCGu----UAGCGCG- -5'
30935 5' -51.6 NC_006552.1 + 15336 0.68 0.793867
Target:  5'- -cGCGACgCACGGCC-UGCAG-CGcCGCa -3'
miRNA:   3'- acCGUUG-GUGUUGGuACGUUaGC-GCG- -5'
30935 5' -51.6 NC_006552.1 + 15609 0.67 0.875061
Target:  5'- gGGCGGCUAgcuCAACCcgGCcagcggcguucuGGUgGCGCu -3'
miRNA:   3'- aCCGUUGGU---GUUGGuaCG------------UUAgCGCG- -5'
30935 5' -51.6 NC_006552.1 + 15977 0.71 0.642622
Target:  5'- cGGCAGCCugcuggagcGCGGCCugcUGCAccaacuggucaGUUGCGCc -3'
miRNA:   3'- aCCGUUGG---------UGUUGGu--ACGU-----------UAGCGCG- -5'
30935 5' -51.6 NC_006552.1 + 19590 0.68 0.813421
Target:  5'- gGGCcuucGCCGCcuCCAgaGCGAUCuGCGCc -3'
miRNA:   3'- aCCGu---UGGUGuuGGUa-CGUUAG-CGCG- -5'
30935 5' -51.6 NC_006552.1 + 20381 0.66 0.904702
Target:  5'- gGGCGACCucgaACAggcgcugcGCCAUGUucUgGUGCa -3'
miRNA:   3'- aCCGUUGG----UGU--------UGGUACGuuAgCGCG- -5'
30935 5' -51.6 NC_006552.1 + 20486 0.66 0.917841
Target:  5'- aGGUGGCCGCuugcACCAggauGUCGCGg -3'
miRNA:   3'- aCCGUUGGUGu---UGGUacguUAGCGCg -5'
30935 5' -51.6 NC_006552.1 + 20523 0.71 0.653867
Target:  5'- cGGCcGCCuuCAGCCGgccuUGC--UCGCGCa -3'
miRNA:   3'- aCCGuUGGu-GUUGGU----ACGuuAGCGCG- -5'
30935 5' -51.6 NC_006552.1 + 20601 0.69 0.763242
Target:  5'- gGGCGGCCcaaguauCGACCGccuccUGCAc-CGCGCg -3'
miRNA:   3'- aCCGUUGGu------GUUGGU-----ACGUuaGCGCG- -5'
30935 5' -51.6 NC_006552.1 + 21150 0.66 0.89043
Target:  5'- gGGCGGCgGCGAC---GCGAUagGCGCa -3'
miRNA:   3'- aCCGUUGgUGUUGguaCGUUAg-CGCG- -5'
30935 5' -51.6 NC_006552.1 + 21220 0.69 0.78382
Target:  5'- aUGGCcGCCAgAGCUucGCugAGUUGCGCg -3'
miRNA:   3'- -ACCGuUGGUgUUGGuaCG--UUAGCGCG- -5'
30935 5' -51.6 NC_006552.1 + 21844 0.66 0.897706
Target:  5'- cGGCAuCCGauACCA---GGUCGCGCg -3'
miRNA:   3'- aCCGUuGGUguUGGUacgUUAGCGCG- -5'
30935 5' -51.6 NC_006552.1 + 21977 0.66 0.917841
Target:  5'- -aGCAguaCGCGACCGUGCA---GCGCc -3'
miRNA:   3'- acCGUug-GUGUUGGUACGUuagCGCG- -5'
30935 5' -51.6 NC_006552.1 + 22046 0.7 0.687432
Target:  5'- cUGGCGGCCugG-CCAgUGCuGUCGCu- -3'
miRNA:   3'- -ACCGUUGGugUuGGU-ACGuUAGCGcg -5'
30935 5' -51.6 NC_006552.1 + 22301 0.66 0.89043
Target:  5'- aUGGUuGCCugAuccACCA-GCAggUGCGCc -3'
miRNA:   3'- -ACCGuUGGugU---UGGUaCGUuaGCGCG- -5'
30935 5' -51.6 NC_006552.1 + 23133 0.75 0.408358
Target:  5'- cUGGUAGgCguaGAgCAUGCAAUCGCGCu -3'
miRNA:   3'- -ACCGUUgGug-UUgGUACGUUAGCGCG- -5'
30935 5' -51.6 NC_006552.1 + 24425 0.67 0.875061
Target:  5'- gGGCAGaCgCACGuuuCCAaGCugcUCGCGCa -3'
miRNA:   3'- aCCGUU-G-GUGUu--GGUaCGuu-AGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.