miRNA display CGI


Results 21 - 40 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30935 5' -51.6 NC_006552.1 + 25817 0.71 0.676284
Target:  5'- cGGCGAgCACGcccgcaugaACCucgGCGAUgGCGCc -3'
miRNA:   3'- aCCGUUgGUGU---------UGGua-CGUUAgCGCG- -5'
30935 5' -51.6 NC_006552.1 + 9381 0.71 0.676284
Target:  5'- cUGGCcacuGCCGCGcacgucgccCCGUGCGG-CGCGCu -3'
miRNA:   3'- -ACCGu---UGGUGUu--------GGUACGUUaGCGCG- -5'
30935 5' -51.6 NC_006552.1 + 22046 0.7 0.687432
Target:  5'- cUGGCGGCCugG-CCAgUGCuGUCGCu- -3'
miRNA:   3'- -ACCGUUGGugUuGGU-ACGuUAGCGcg -5'
30935 5' -51.6 NC_006552.1 + 59341 0.7 0.687432
Target:  5'- cGGUAAcagcgucagcCCGCcGCCGauggcaGCGAUCGCGCg -3'
miRNA:   3'- aCCGUU----------GGUGuUGGUa-----CGUUAGCGCG- -5'
30935 5' -51.6 NC_006552.1 + 44869 0.7 0.698525
Target:  5'- aGGCAGCCAgGucuugaACCAUG-AGUUGgGCa -3'
miRNA:   3'- aCCGUUGGUgU------UGGUACgUUAGCgCG- -5'
30935 5' -51.6 NC_006552.1 + 50210 0.7 0.720497
Target:  5'- -cGCGAUCACAACUgcgGCGAUCGagGCg -3'
miRNA:   3'- acCGUUGGUGUUGGua-CGUUAGCg-CG- -5'
30935 5' -51.6 NC_006552.1 + 41391 0.7 0.731352
Target:  5'- aGGC-GCCACucagggucAGCCAgGCAG-CGCGCc -3'
miRNA:   3'- aCCGuUGGUG--------UUGGUaCGUUaGCGCG- -5'
30935 5' -51.6 NC_006552.1 + 51094 0.69 0.752737
Target:  5'- cUGGCuucGCgCACAACUcgacGCGAUCGcCGCg -3'
miRNA:   3'- -ACCGu--UG-GUGUUGGua--CGUUAGC-GCG- -5'
30935 5' -51.6 NC_006552.1 + 60560 0.69 0.763242
Target:  5'- cGGCGacucGCCGCAGgCAUGUcccucGAggaCGCGCu -3'
miRNA:   3'- aCCGU----UGGUGUUgGUACG-----UUa--GCGCG- -5'
30935 5' -51.6 NC_006552.1 + 43517 0.69 0.763242
Target:  5'- cGGCGAUUcguACCGUGCAcuccucgucUCGCGCg -3'
miRNA:   3'- aCCGUUGGuguUGGUACGUu--------AGCGCG- -5'
30935 5' -51.6 NC_006552.1 + 20601 0.69 0.763242
Target:  5'- gGGCGGCCcaaguauCGACCGccuccUGCAc-CGCGCg -3'
miRNA:   3'- aCCGUUGGu------GUUGGU-----ACGUuaGCGCG- -5'
30935 5' -51.6 NC_006552.1 + 10874 0.69 0.763242
Target:  5'- cGGCuugucGAUCACcACCAUGCg--CGCGUu -3'
miRNA:   3'- aCCG-----UUGGUGuUGGUACGuuaGCGCG- -5'
30935 5' -51.6 NC_006552.1 + 59822 0.69 0.773608
Target:  5'- aGGUgaugGACCugAACCGccGCuuuuccAUCGCGCa -3'
miRNA:   3'- aCCG----UUGGugUUGGUa-CGu-----UAGCGCG- -5'
30935 5' -51.6 NC_006552.1 + 21220 0.69 0.78382
Target:  5'- aUGGCcGCCAgAGCUucGCugAGUUGCGCg -3'
miRNA:   3'- -ACCGuUGGUgUUGGuaCG--UUAGCGCG- -5'
30935 5' -51.6 NC_006552.1 + 61369 0.69 0.78382
Target:  5'- cGGgAGCCG-GGCCAUGUuuUgGCGCg -3'
miRNA:   3'- aCCgUUGGUgUUGGUACGuuAgCGCG- -5'
30935 5' -51.6 NC_006552.1 + 44665 0.69 0.78382
Target:  5'- cGGCuACCACAGCCGccUGCugGAUUuccgGCGUc -3'
miRNA:   3'- aCCGuUGGUGUUGGU--ACG--UUAG----CGCG- -5'
30935 5' -51.6 NC_006552.1 + 38461 0.69 0.78382
Target:  5'- cUGGauGCCGCugguGGCCGUGCcuUUGCGCc -3'
miRNA:   3'- -ACCguUGGUG----UUGGUACGuuAGCGCG- -5'
30935 5' -51.6 NC_006552.1 + 54725 0.68 0.793867
Target:  5'- gUGGCGACUucuGGCUGUGCGAcgGCGCc -3'
miRNA:   3'- -ACCGUUGGug-UUGGUACGUUagCGCG- -5'
30935 5' -51.6 NC_006552.1 + 61176 0.68 0.793867
Target:  5'- -uGCGACCAC-GCUcgGCAAgccUGCGCc -3'
miRNA:   3'- acCGUUGGUGuUGGuaCGUUa--GCGCG- -5'
30935 5' -51.6 NC_006552.1 + 15336 0.68 0.793867
Target:  5'- -cGCGACgCACGGCC-UGCAG-CGcCGCa -3'
miRNA:   3'- acCGUUG-GUGUUGGuACGUUaGC-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.