miRNA display CGI


Results 21 - 40 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30935 5' -51.6 NC_006552.1 + 38244 0.66 0.89043
Target:  5'- aGGCGGCgC-CggUC-UGCGgAUCGCGCu -3'
miRNA:   3'- aCCGUUG-GuGuuGGuACGU-UAGCGCG- -5'
30935 5' -51.6 NC_006552.1 + 21150 0.66 0.89043
Target:  5'- gGGCGGCgGCGAC---GCGAUagGCGCa -3'
miRNA:   3'- aCCGUUGgUGUUGguaCGUUAg-CGCG- -5'
30935 5' -51.6 NC_006552.1 + 22301 0.66 0.89043
Target:  5'- aUGGUuGCCugAuccACCA-GCAggUGCGCc -3'
miRNA:   3'- -ACCGuUGGugU---UGGUaCGUuaGCGCG- -5'
30935 5' -51.6 NC_006552.1 + 32036 0.66 0.89043
Target:  5'- aUGuCAGCCAgGGgCGUGCGGUagcccuccaCGCGCa -3'
miRNA:   3'- -ACcGUUGGUgUUgGUACGUUA---------GCGCG- -5'
30935 5' -51.6 NC_006552.1 + 55681 0.66 0.89043
Target:  5'- cGGCuGCCAgGaaggggucgaucGCCggGCGAgaCGCGCa -3'
miRNA:   3'- aCCGuUGGUgU------------UGGuaCGUUa-GCGCG- -5'
30935 5' -51.6 NC_006552.1 + 35832 0.66 0.89043
Target:  5'- aUGGCAGCCugAGCCGccGcCAGUUG-GUu -3'
miRNA:   3'- -ACCGUUGGugUUGGUa-C-GUUAGCgCG- -5'
30935 5' -51.6 NC_006552.1 + 36102 0.66 0.89043
Target:  5'- cGGCGucacCCGC-GCCcUGCug-CGCGCc -3'
miRNA:   3'- aCCGUu---GGUGuUGGuACGuuaGCGCG- -5'
30935 5' -51.6 NC_006552.1 + 58119 0.66 0.888942
Target:  5'- gGGCAgcagaaguggaagACCGCAGCCGacUGCAucgacugGUCGUa- -3'
miRNA:   3'- aCCGU-------------UGGUGUUGGU--ACGU-------UAGCGcg -5'
30935 5' -51.6 NC_006552.1 + 10623 0.67 0.885933
Target:  5'- aUGGCGccagcagucucaccgGCCACGGCgAUGCuggccugauGAUCGCu- -3'
miRNA:   3'- -ACCGU---------------UGGUGUUGgUACG---------UUAGCGcg -5'
30935 5' -51.6 NC_006552.1 + 26456 0.67 0.88288
Target:  5'- cUGGgGGCCGCGcaGCCAcGCcacagcCGCGCc -3'
miRNA:   3'- -ACCgUUGGUGU--UGGUaCGuua---GCGCG- -5'
30935 5' -51.6 NC_006552.1 + 13894 0.67 0.88288
Target:  5'- gUGGCuugcuCCACGGCCGccUGCugagcAUCgGUGCg -3'
miRNA:   3'- -ACCGuu---GGUGUUGGU--ACGu----UAG-CGCG- -5'
30935 5' -51.6 NC_006552.1 + 49186 0.67 0.877435
Target:  5'- cGGCGGCCugguccggcuggucaGCAACCggGUgaucuacGGUCGCGa -3'
miRNA:   3'- aCCGUUGG---------------UGUUGGuaCG-------UUAGCGCg -5'
30935 5' -51.6 NC_006552.1 + 56262 0.67 0.875061
Target:  5'- cUGGCAGCCAaGGCCG-GC-GUC-CGCc -3'
miRNA:   3'- -ACCGUUGGUgUUGGUaCGuUAGcGCG- -5'
30935 5' -51.6 NC_006552.1 + 24425 0.67 0.875061
Target:  5'- gGGCAGaCgCACGuuuCCAaGCugcUCGCGCa -3'
miRNA:   3'- aCCGUU-G-GUGUu--GGUaCGuu-AGCGCG- -5'
30935 5' -51.6 NC_006552.1 + 15609 0.67 0.875061
Target:  5'- gGGCGGCUAgcuCAACCcgGCcagcggcguucuGGUgGCGCu -3'
miRNA:   3'- aCCGUUGGU---GUUGGuaCG------------UUAgCGCG- -5'
30935 5' -51.6 NC_006552.1 + 8173 0.67 0.875061
Target:  5'- cUGcGCAucgGCCGCGuCCAU-CAccugGUCGCGCa -3'
miRNA:   3'- -AC-CGU---UGGUGUuGGUAcGU----UAGCGCG- -5'
30935 5' -51.6 NC_006552.1 + 2158 0.67 0.875061
Target:  5'- cUGGCcACCAUAACCccucucccGCGAUagcccauacCGCGCc -3'
miRNA:   3'- -ACCGuUGGUGUUGGua------CGUUA---------GCGCG- -5'
30935 5' -51.6 NC_006552.1 + 13495 0.67 0.872664
Target:  5'- gGGUAGCCAuccuugccgaaguuCAcCCcgGCAAggUGCGCg -3'
miRNA:   3'- aCCGUUGGU--------------GUuGGuaCGUUa-GCGCG- -5'
30935 5' -51.6 NC_006552.1 + 48588 0.67 0.866979
Target:  5'- uUGGCGACgACAucACCGUGaCcGUCGuCGa -3'
miRNA:   3'- -ACCGUUGgUGU--UGGUAC-GuUAGC-GCg -5'
30935 5' -51.6 NC_006552.1 + 63200 0.67 0.866979
Target:  5'- aGGCGuuguccugGCCGCAACgGUgaacccucgcgGCAcgUGCGCc -3'
miRNA:   3'- aCCGU--------UGGUGUUGgUA-----------CGUuaGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.